Variant report

Variant	rs1420960
Chromosome Location	chr18:25198599-25198600
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1008854	0.83[ASN][1000 genomes]
rs1030095	0.83[ASN][1000 genomes]
rs1030096	0.83[ASN][1000 genomes]
rs13381024	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1420956	0.91[ASN][1000 genomes]
rs1420957	0.90[ASN][1000 genomes]
rs1420958	0.89[ASN][1000 genomes]
rs28550271	0.82[ASN][1000 genomes]
rs7236882	0.90[ASN][1000 genomes]
rs8083861	0.90[ASN][1000 genomes]
rs8091034	0.91[ASN][1000 genomes]
rs8097226	0.91[ASN][1000 genomes]
rs9955609	0.83[ASN][1000 genomes]
rs9957578	0.94[ASN][1000 genomes]
rs9960073	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25195200-25198600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:25197800-25199200	Enhancers	Liver	Liver
3	chr18:25198400-25199800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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