Variant report

Variant	rs142105652
Chromosome Location	chr19:19257630-19257631
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19256536..19257795-chr19:19335453..19336563,6	K562	blood:
2	chr19:19255404..19257659-chr19:19284521..19286455,2	MCF-7	breast:
3	chr19:19256986..19258227-chr19:19600904..19601838,3	K562	blood:
4	chr19:19247943..19252165-chr19:19253353..19258358,6	MCF-7	breast:
5	chr19:19256536..19257940-chr19:19284998..19286463,13	K562	blood:
6	chr19:19244353..19249759-chr19:19255407..19258937,4	K562	blood:
7	chr19:19255446..19258219-chr19:19516334..19519310,2	K562	blood:
8	chr19:19248259..19252724-chr19:19255347..19258957,6	K562	blood:
9	chr19:19256328..19259156-chr19:19260184..19262350,2	K562	blood:
10	chr19:19244353..19247237-chr19:19256209..19258577,3	K562	blood:
11	chr19:19256287..19258012-chr19:19281605..19284547,2	MCF-7	breast:
12	chr19:19256714..19258760-chr19:19284890..19287381,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000167491	Chromatin interaction
ENSG00000064545	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833779	chr19:19163492-19313091	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv819543	chr19:19257144-19258357	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3507927	chr19:19257302-19259300	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19249400-19259600	Weak transcription	Aorta	Aorta
2	chr19:19249400-19259800	Weak transcription	Left Ventricle	heart
3	chr19:19249400-19271200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:19249600-19258400	Weak transcription	Right Atrium	heart
5	chr19:19249600-19271800	Weak transcription	Brain Substantia Nigra	brain
6	chr19:19249600-19282600	Weak transcription	NHLF	lung
7	chr19:19249800-19258400	Weak transcription	Dnd41	blood
8	chr19:19249800-19258800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:19249800-19259600	Weak transcription	Primary T cells from cord blood	blood
10	chr19:19249800-19259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr19:19249800-19260000	Weak transcription	Brain Anterior Caudate	brain
12	chr19:19249800-19261800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr19:19249800-19269000	Weak transcription	Brain Angular Gyrus	brain
14	chr19:19249800-19271200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr19:19249800-19280600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr19:19250000-19261400	Weak transcription	HepG2	liver
17	chr19:19250000-19266800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr19:19250600-19271800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr19:19252800-19272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr19:19253600-19265600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr19:19255800-19261400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr19:19256000-19262600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr19:19256400-19258800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr19:19256800-19258000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr19:19257000-19257800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr19:19257000-19257800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr19:19257000-19258000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr19:19257000-19258000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr19:19257000-19258200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr19:19257000-19258200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr19:19257000-19259000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr19:19257000-19259800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr19:19257000-19259800	Weak transcription	Brain Germinal Matrix	brain
34	chr19:19257000-19259800	Weak transcription	Fetal Lung	lung
35	chr19:19257000-19260600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr19:19257000-19261000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr19:19257000-19261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr19:19257000-19261600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr19:19257000-19261800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr19:19257000-19262000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr19:19257000-19262400	Strong transcription	Fetal Intestine Small	intestine
42	chr19:19257000-19263000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr19:19257000-19266600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr19:19257000-19271200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr19:19257000-19271600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr19:19257000-19280400	Weak transcription	Gastric	stomach
47	chr19:19257000-19280400	Weak transcription	Pancreas	Pancrea
48	chr19:19257200-19257800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr19:19257200-19258200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr19:19257200-19258400	Strong transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links