Variant report

Variant	rs1421358
Chromosome Location	chr12:47711869-47711870
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs214643	0.91[ASN][1000 genomes]
rs214644	0.91[ASN][1000 genomes]
rs214646	0.91[ASN][1000 genomes]
rs214647	0.91[ASN][1000 genomes]
rs214649	0.91[ASN][1000 genomes]
rs214651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214654	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855128	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv522275	chr12:47707836-47718183	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47705200-47712200	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:47705400-47712800	Weak transcription	Spleen	Spleen
3	chr12:47709200-47727000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:47711000-47712400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:47711200-47713800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:47711400-47712800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:47711400-47714000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr12:47711400-47714000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr12:47711600-47712000	Enhancers	Liver	Liver
10	chr12:47711600-47713800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:47711600-47714800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr12:47711600-47714800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr12:47711800-47712200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr12:47711800-47712800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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