Variant report

Variant	rs1421703
Chromosome Location	chr5:164595324-164595325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NUDCD2-11	chr5:164595189-164595376	l_3052_chr5:164595188-164600866_testes

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10515888	0.81[EUR][1000 genomes]
rs10515889	0.82[EUR][1000 genomes]
rs1421683	0.81[EUR][1000 genomes]
rs1421702	0.83[EUR][1000 genomes]
rs1421711	0.82[EUR][1000 genomes]
rs1421712	0.83[EUR][1000 genomes]
rs1582420	0.81[EUR][1000 genomes]
rs17052756	0.81[EUR][1000 genomes]
rs17072820	0.81[EUR][1000 genomes]
rs17073151	0.83[EUR][1000 genomes]
rs17074007	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17074187	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs194141	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287655	0.81[EUR][1000 genomes]
rs253542	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs253543	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs253545	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs253546	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4535473	0.81[EUR][1000 genomes]
rs55712091	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57398505	0.81[EUR][1000 genomes]
rs60162408	0.81[EUR][1000 genomes]
rs61649684	0.81[EUR][1000 genomes]
rs6889618	0.81[EUR][1000 genomes]
rs72815322	0.81[EUR][1000 genomes]
rs72815324	0.81[EUR][1000 genomes]
rs72815326	0.81[EUR][1000 genomes]
rs72815330	0.81[EUR][1000 genomes]
rs72817557	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3415079	chr5:164592324-164595872	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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