Variant report

Variant	rs142177829
Chromosome Location	chr11:47043455-47043456
allele	-/CCAATGACAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47041841..47045384-chr11:47049919..47053840,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2345925	chr11:47043455-47043465	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:47027800-47048000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:47041000-47043600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:47041600-47043600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:47041600-47043600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:47041600-47043800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:47041800-47044800	Weak transcription	Hela-S3	cervix
9	chr11:47042000-47043600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:47042000-47043800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:47042000-47043800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:47042200-47043600	Enhancers	Small Intestine	intestine
13	chr11:47042400-47043600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:47042600-47043600	Enhancers	Fetal Stomach	stomach
15	chr11:47042800-47043600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:47042800-47043600	Enhancers	Brain Germinal Matrix	brain
17	chr11:47043000-47043800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:47043000-47046000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:47043000-47050000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:47043200-47047600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:47043200-47049000	Weak transcription	Fetal Lung	lung
22	chr11:47043200-47055200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:47043400-47043600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:47043400-47043600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links