Variant report

Variant	rs1421797
Chromosome Location	chr5:97435257-97435258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58115898	1.00[AMR][1000 genomes]
rs58801667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60847826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61158497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141622	1.00[AMR][1000 genomes]
rs73145465	1.00[AMR][1000 genomes]
rs73145470	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145475	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031989	chr5:97333291-97524353	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1034472	chr5:97357264-97523965	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1019049	chr5:97373215-97442582	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2758004	chr5:97395508-97550089	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv2759357	chr5:97395508-97616089	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv599076	chr5:97423476-97478555	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv32866	chr5:97424721-97463865	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97432200-97440800	Weak transcription	HSMM	muscle
2	chr5:97432400-97443400	Weak transcription	NH-A	brain
3	chr5:97432600-97435600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:97432600-97437200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:97432800-97439600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:97432800-97440600	Weak transcription	NHLF	lung
7	chr5:97432800-97441400	Weak transcription	Osteobl	bone
8	chr5:97434000-97435600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:97434000-97435600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:97435200-97435600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:97435200-97435800	Flanking Active TSS	HUVEC	blood vessel
12	chr5:97435200-97436200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:97435200-97436200	Enhancers	HMEC	breast
14	chr5:97435200-97436200	Enhancers	NHEK	skin
15	chr5:97435200-97437000	Enhancers	NHDF-Ad	bronchial
16	chr5:97435200-97437600	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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