Variant report

Variant	rs142192937
Chromosome Location	chr6:117803248-117803249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:117802970-117803647	HEK293	kidney:	n/a	n/a
2	POLR2A	chr6:117803169-117805197	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr6:117803222-117805163	HUVEC	blood vessel:	n/a	n/a
4	ZEB1	chr6:117802335-117803996	HepG2	liver:	n/a	n/a
5	TEAD4	chr6:117802968-117803750	HepG2	liver:	n/a	n/a
6	MAX	chr6:117803223-117805130	ECC-1	luminal epithelium:	n/a	n/a
7	MYBL2	chr6:117802336-117804909	HepG2	liver:	n/a	n/a
8	E2F6	chr6:117802498-117804805	K562	blood:	n/a	chr6:117803156-117803168 chr6:117804649-117804659 chr6:117804518-117804529 chr6:117803839-117803849
9	MAX	chr6:117803135-117805120	HCT-116	colon:	n/a	n/a
10	USF2	chr6:117803153-117803761	H1-hESC	embryonic stem cell:	n/a	chr6:117803497-117803513 chr6:117803628-117803644
11	STAT1	chr6:117803084-117803850	GM12878	blood:	n/a	chr6:117803718-117803725
12	EGR1	chr6:117803086-117804093	HCT-116	colon:	n/a	chr6:117803769-117803782 chr6:117803770-117803779 chr6:117803766-117803780 chr6:117803768-117803782 chr6:117803160-117803173 chr6:117803770-117803781 chr6:117803769-117803782 chr6:117803769-117803782 chr6:117803658-117803668 chr6:117803770-117803780 chr6:117803770-117803780
13	SIN3A	chr6:117802998-117805157	H1-hESC	embryonic stem cell:	n/a	chr6:117803215-117803223 chr6:117803630-117803641 chr6:117803875-117803888
14	MAX	chr6:117802996-117805213	HCT-116	colon:	n/a	n/a
15	MAX	chr6:117802511-117803724	H1-hESC	embryonic stem cell:	n/a	n/a
16	MAX	chr6:117802983-117805154	NB4	blood:	n/a	n/a
17	MAZ	chr6:117802540-117804952	K562	blood:	n/a	n/a
18	MXI1	chr6:117802473-117805177	HepG2	liver:	n/a	n/a
19	MYC	chr6:117802686-117805224	K562	blood:	n/a	n/a
20	TCF7L2	chr6:117803228-117804779	HCT-116	colon:	n/a	n/a
21	CTBP2	chr6:117802734-117804761	H1-hESC	embryonic stem cell:	n/a	n/a
22	E2F6	chr6:117802405-117804887	H1-hESC	embryonic stem cell:	n/a	chr6:117803156-117803168 chr6:117804649-117804659 chr6:117804518-117804529 chr6:117803839-117803849
23	POLR2A	chr6:117803146-117805160	HUVEC	blood vessel:	n/a	n/a
24	HEY1	chr6:117802535-117804976	HepG2	liver:	n/a	chr6:117803658-117803673
25	POLR2A	chr6:117802530-117804840	HepG2	liver:	n/a	n/a
26	MAX	chr6:117802338-117805250	HepG2	liver:	n/a	n/a
27	CREB1	chr6:117802394-117804854	HepG2	liver:	n/a	n/a
28	MYC	chr6:117802544-117805091	K562	blood:	n/a	n/a
29	POLR2A	chr6:117803233-117805146	GM12891	blood:	n/a	n/a
30	E2F6	chr6:117802926-117804853	H1-hESC	embryonic stem cell:	n/a	chr6:117803156-117803168 chr6:117804649-117804659 chr6:117804518-117804529 chr6:117803839-117803849
31	MYC	chr6:117803201-117805200	MCF10A-Er-Src	breast:	n/a	n/a
32	ZNF263	chr6:117802610-117805129	HEK293-T-REx	kidney:	n/a	chr6:117803607-117803616
33	MAX	chr6:117803162-117805206	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr6:117803233-117805191	GM12878	blood:	n/a	n/a
35	MAFK	chr6:117803090-117803301	HepG2	liver:	n/a	n/a
36	POLR2A	chr6:117802892-117805136	IMR90	lung:	n/a	n/a
37	TBL1XR1	chr6:117803209-117803703	K562	blood:	n/a	n/a
38	MAX	chr6:117802988-117804949	A549	lung:	n/a	n/a
39	MAX	chr6:117802478-117804814	H1-hESC	embryonic stem cell:	n/a	n/a
40	MXI1	chr6:117802924-117805321	IMR90	lung:	n/a	n/a
41	RCOR1	chr6:117802471-117804805	K562	blood:	n/a	n/a
42	MYBL2	chr6:117802302-117803912	HepG2	liver:	n/a	n/a
43	MAX	chr6:117803034-117803807	A549	lung:	n/a	n/a
44	NFIC	chr6:117802906-117803429	HepG2	liver:	n/a	n/a
45	POLR2A	chr6:117803184-117804777	PANC-1	pancreas:	n/a	n/a
46	RCOR1	chr6:117802679-117803884	K562	blood:	n/a	n/a
47	HA-E2F1	chr6:117802945-117805068	MCF-7	breast:	n/a	chr6:117803156-117803168 chr6:117804649-117804659 chr6:117803839-117803849
48	SIN3AK20	chr6:117803234-117804099	HepG2	liver:	n/a	n/a
49	JUND	chr6:117803062-117804963	K562	blood:	n/a	chr6:117804338-117804347 chr6:117803467-117803481
50	MAX	chr6:117803082-117803993	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:117802655..117804398-chr6:117864844..117866459,3	MCF-7	breast:
2	chr6:117802549..117804711-chr6:117824121..117828201,5	K562	blood:
3	chr6:101327181..101330084-chr6:117801293..117803939,2	K562	blood:
4	chr6:117803211..117805462-chr6:117921337..117926538,8	K562	blood:
5	chr6:117798788..117807313-chr6:117921918..117925735,11	MCF-7	breast:
6	chr6:117802223..117804604-chr6:117922456..117924196,2	MCF-7	breast:

Variant related genes	Relation type
DCBLD1	TF binding region
ENSG00000260000	Chromatin interaction
ENSG00000047932	Chromatin interaction
ENSG00000164465	Chromatin interaction
ENSG00000112249	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3434198	chr6:117802809-117805457	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117800200-117803400	Weak transcription	Small Intestine	intestine
2	chr6:117802400-117803600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:117802400-117803800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:117802400-117806400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:117802600-117803400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:117802600-117803400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:117802600-117803400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:117802600-117803400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr6:117802600-117803400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr6:117802600-117803400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:117802600-117803400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:117802600-117803400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:117802600-117803400	Enhancers	Pancreas	Pancrea
14	chr6:117802600-117803400	Enhancers	Right Atrium	heart
15	chr6:117802600-117803400	Enhancers	Right Ventricle	heart
16	chr6:117802600-117803400	Enhancers	HMEC	breast
17	chr6:117802600-117803600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:117802600-117803600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:117802600-117803600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:117802600-117803600	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr6:117802600-117803600	Flanking Active TSS	GM12878-XiMat	blood
22	chr6:117802600-117803600	Flanking Bivalent TSS/Enh	HepG2	liver
23	chr6:117802600-117803600	Flanking Active TSS	K562	blood
24	chr6:117802600-117803800	Bivalent Enhancer	Fetal Thymus	thymus
25	chr6:117802600-117804000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:117802600-117804800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr6:117802600-117805000	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:117802800-117803400	Bivalent Enhancer	Fetal Kidney	kidney
29	chr6:117802800-117803400	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr6:117802800-117803400	Enhancers	Spleen	Spleen
31	chr6:117802800-117803400	Flanking Active TSS	A549	lung
32	chr6:117802800-117803600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr6:117802800-117803600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:117802800-117803600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr6:117802800-117803600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
36	chr6:117802800-117803600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr6:117802800-117803600	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr6:117802800-117803600	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr6:117802800-117803600	Flanking Active TSS	Fetal Intestine Small	intestine
40	chr6:117802800-117803600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr6:117802800-117803600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr6:117802800-117803600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr6:117802800-117803600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr6:117802800-117803600	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr6:117802800-117803800	Flanking Active TSS	Colonic Mucosa	Colon
46	chr6:117802800-117804400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr6:117802800-117804800	Active TSS	Brain Hippocampus Middle	brain
48	chr6:117802800-117804800	Bivalent/Poised TSS	Fetal Brain Female	brain
49	chr6:117802800-117805000	Active TSS	Gastric	stomach
50	chr6:117802800-117805200	Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links