Variant report

Variant	rs142216993
Chromosome Location	chr3:179654793-179654794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3337930	chr3:179652358-179656756	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3326474	chr3:179653283-179656131	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2750492	chr3:179653421-179654830	Enhancers Genic enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv2750497	chr3:179653421-179654830	Weak transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv2750603	chr3:179653421-179654830	Genic enhancers Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv2750657	chr3:179653421-179654830	Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
9	esv2750694	chr3:179653421-179654830	Genic enhancers Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	esv2750709	chr3:179653421-179654830	Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
11	esv2750727	chr3:179653421-179654830	Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
12	esv3391315	chr3:179653633-179655806	Weak transcription ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	n/a
13	esv2554672	chr3:179653853-179655355	Weak transcription ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	n/a
14	esv3507089	chr3:179654055-179655856	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
15	esv8438	chr3:179654106-179655030	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3395115	chr3:179654108-179655356	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
17	esv2395412	chr3:179654145-179654969	Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv3462930	chr3:179654220-179654909	Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3507088	chr3:179654236-179654894	Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv3507087	chr3:179654237-179654912	Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv3507082	chr3:179654253-179654847	Weak transcription	n/a	n/a	inside rSNPs	n/a
22	esv3507084	chr3:179654258-179654838	Weak transcription	n/a	n/a	inside rSNPs	n/a
23	esv3462925	chr3:179654265-179654875	Weak transcription	n/a	n/a	inside rSNPs	n/a
24	esv3462927	chr3:179654266-179654876	Weak transcription	n/a	n/a	inside rSNPs	n/a
25	esv3462926	chr3:179654278-179654829	Weak transcription	n/a	n/a	inside rSNPs	n/a
26	esv3507083	chr3:179654281-179654849	Weak transcription	n/a	n/a	inside rSNPs	n/a
27	esv3507081	chr3:179654282-179654855	Weak transcription	n/a	n/a	inside rSNPs	n/a
28	esv3385778	chr3:179654323-179654806	Weak transcription	n/a	n/a	inside rSNPs	n/a
29	esv3462928	chr3:179654326-179654809	Weak transcription	n/a	n/a	inside rSNPs	n/a
30	esv3507086	chr3:179654338-179654804	Weak transcription	n/a	n/a	inside rSNPs	n/a
31	esv1008971	chr3:179654340-179654804	Weak transcription	n/a	n/a	inside rSNPs	n/a
32	esv3462931	chr3:179654340-179654807	Weak transcription	n/a	n/a	inside rSNPs	n/a
33	esv3507090	chr3:179654340-179654807	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179644400-179660000	Weak transcription	Pancreas	Pancrea
2	chr3:179648400-179660000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:179652000-179655200	Weak transcription	Dnd41	blood
4	chr3:179652000-179660200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:179653000-179659200	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:179653600-179660400	Weak transcription	Brain Substantia Nigra	brain
7	chr3:179654000-179659800	Weak transcription	Brain Inferior Temporal Lobe	brain

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