Variant report

Variant	rs1422227
Chromosome Location	chr5:58066222-58066223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1345640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1363336	1.00[AMR][1000 genomes]
rs1607025	1.00[AMR][1000 genomes]
rs1607026	1.00[AMR][1000 genomes]
rs16888286	1.00[AMR][1000 genomes]
rs16888314	1.00[AMR][1000 genomes]
rs16888328	1.00[AMR][1000 genomes]
rs16888337	1.00[AMR][1000 genomes]
rs16888391	1.00[AMR][1000 genomes]
rs16888394	1.00[AMR][1000 genomes]
rs16888470	1.00[AMR][1000 genomes]
rs16888696	1.00[AMR][1000 genomes]
rs16888929	1.00[AMR][1000 genomes]
rs59671367	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58043000-58067800	Weak transcription	Fetal Intestine Small	intestine
2	chr5:58061800-58067800	Weak transcription	Pancreas	Pancrea
3	chr5:58063400-58068600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:58063600-58068800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:58064000-58068200	Weak transcription	Brain Germinal Matrix	brain
6	chr5:58065600-58066400	Enhancers	Fetal Lung	lung
7	chr5:58066200-58068200	Weak transcription	Fetal Brain Female	brain
8	chr5:58066200-58069000	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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