Variant report

Variant	rs1422436
Chromosome Location	chr5:107133199-107133200
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10054885	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061482	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10479410	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515378	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11738855	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739903	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739995	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34813961	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35762765	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888213	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795904	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795909	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv969928	chr5:107132237-107143800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107127800-107135400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:107130200-107135200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:107130800-107140400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:107132600-107135000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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