Variant report

Variant	rs142277306
Chromosome Location	chr3:82785877-82785878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877045	chr3:82728631-82808608	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv963565	chr3:82766875-82790137	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3415061	chr3:82785462-82789160	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82782400-82792400	Weak transcription	Gastric	stomach
2	chr3:82785600-82786200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:82785600-82786200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:82785600-82786200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:82785800-82786000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr3:82785800-82786000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:82785800-82786200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:82785800-82786200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:82785800-82786200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:82785800-82786200	Active TSS	Brain Hippocampus Middle	brain
11	chr3:82785800-82786400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr3:82785800-82786400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:82785800-82786400	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links