Variant report

Variant	rs142316600
Chromosome Location	chr13:96331167-96331168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr13:96328102-96331205	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr13:96331069-96332293	GM12878	blood:	n/a	n/a
3	MAX	chr13:96331147-96331344	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96327839..96330034-chr13:96330873..96332549,2	MCF-7	breast:

Variant related genes	Relation type
DNAJC3-AS1	TF binding region
ENSG00000102580	Chromatin interaction
ENSG00000247400	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96325600-96332400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:96327000-96331800	Active TSS	GM12878-XiMat	blood
3	chr13:96327600-96331200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr13:96327600-96331400	Active TSS	Right Ventricle	heart
5	chr13:96328000-96331200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:96328000-96331200	Active TSS	Colonic Mucosa	Colon
7	chr13:96328000-96331200	Active TSS	Ovary	ovary
8	chr13:96328000-96332000	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr13:96328200-96331200	Active TSS	Fetal Muscle Trunk	muscle
10	chr13:96328200-96331200	Active TSS	HSMM	muscle
11	chr13:96328200-96331400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:96328200-96331400	Active TSS	Aorta	Aorta
13	chr13:96328200-96331400	Active TSS	Left Ventricle	heart
14	chr13:96328200-96331400	Active TSS	Pancreas	Pancrea
15	chr13:96328400-96331200	Active TSS	NHDF-Ad	bronchial
16	chr13:96328600-96331600	Active TSS	Rectal Smooth Muscle	rectum
17	chr13:96329600-96332400	Active TSS	Right Atrium	heart
18	chr13:96329800-96331400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:96330000-96331200	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr13:96330000-96331200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr13:96330000-96331200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr13:96330000-96331200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr13:96330000-96331200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr13:96330000-96331400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr13:96330000-96331400	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr13:96330000-96331400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr13:96330000-96331600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr13:96330000-96331800	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr13:96330200-96332000	Flanking Active TSS	Dnd41	blood
30	chr13:96330200-96333200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr13:96330200-96340800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr13:96330400-96331200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr13:96330400-96331200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr13:96330400-96331200	Flanking Active TSS	Liver	Liver
35	chr13:96330400-96331200	Flanking Active TSS	Brain Cingulate Gyrus	brain
36	chr13:96330400-96331400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:96330400-96331400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr13:96330400-96331400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr13:96330400-96331400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr13:96330400-96331400	Flanking Active TSS	HUVEC	blood vessel
41	chr13:96330400-96332200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr13:96330600-96331200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr13:96330600-96331200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
44	chr13:96330600-96331200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:96330600-96331200	Flanking Active TSS	Fetal Heart	heart
46	chr13:96330600-96331200	Weak transcription	Stomach Mucosa	stomach
47	chr13:96330600-96331400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:96330600-96331400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr13:96330600-96331400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr13:96330600-96331400	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links