Variant report

Variant	rs1423240
Chromosome Location	chr5:41684432-41684433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10941555	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11750571	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11958154	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12659601	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13176076	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17213962	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs35520000	0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1423240	LIFR	cis	cerebellum	SCAN
rs1423240	GRIA3	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41678800-41685400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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