Variant report

Variant	rs142337805
Chromosome Location	chr19:55876068-55876069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr19:55874913-55876452	A549	lung:	n/a	n/a
2	POLR2A	chr19:55876050-55876299	A549	lung:	n/a	n/a
3	PBX3	chr19:55874792-55876466	A549	lung:	n/a	n/a
4	GATA3	chr19:55874959-55876287	A549	lung:	n/a	n/a
5	POLR2A	chr19:55874036-55876438	A549	lung:	n/a	n/a
6	POLR2A	chr19:55873343-55882901	IMR90	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:55876060-55876110	HRCEpiC	kidney:	n/a
2	chr19:55876060-55876110	NH-A	brain:	n/a
3	chr19:55876060-55876110	BE2_C	brain:	n/a
4	chr19:55876060-55876110	BJ	skin:	n/a
5	chr19:55876060-55876110	ovcar-3	ovarian:	n/a
6	chr19:55876060-55876110	HL-60	blood:	n/a
7	chr19:55876060-55876110	HEK293	kidney:	embryo
8	chr19:55876060-55876110	HCM	heart:	n/a
9	chr19:55876060-55876110	MCF-7	breast:	n/a
10	chr19:55876060-55876110	Caco-2	colon:	n/a
11	chr19:55876060-55876110	HAEpiC	amniotic membrane:	n/a
12	chr19:55876060-55876110	PANC-1	pancreas:	n/a
13	chr19:55876060-55876110	Hela-S3	cervix:	n/a
14	chr19:55876060-55876110	U87	brain:	n/a
15	chr19:55876060-55876110	HNPCEpiC	eye:	n/a
16	chr19:55876060-55876110	HRE	kidney:	n/a
17	chr19:55876060-55876110	Jurkat	blood:	n/a
18	chr19:55876060-55876110	HRPEpiC	eye:	n/a
19	chr19:55876060-55876110	ECC-1	luminal epithelium:	n/a
20	chr19:55876060-55876110	SK-N-SH	brain:	n/a
21	chr19:55876060-55876110	GM12878	blood:	n/a
22	chr19:55876060-55876110	AoSMC	blood vessel:	n/a
23	chr19:55876060-55876110	PrEC	prostate:	n/a
24	chr19:55876060-55876110	NHBE	bronchial:	n/a
25	chr19:55876060-55876110	HPAEpiC	pulmonary alveolar:	n/a
26	chr19:55876060-55876110	A549	lung:	n/a
27	chr19:55876060-55876110	LNCaP	prostate:	n/a
28	chr19:55876060-55876110	HCPEpiC	choroid plexus:	n/a
29	chr19:55876060-55876110	NHDF-neo	bronchial:	n/a
30	chr19:55876060-55876110	GM12892	blood:	n/a
31	chr19:55876060-55876110	HMEC	breast:	n/a
32	chr19:55876060-55876110	AG09309	skin:	n/a
33	chr19:55876060-55876110	T-47D	breast:	n/a
34	chr19:55876060-55876110	RPTEC	kidney:	n/a
35	chr19:55876060-55876110	HepG2	liver:	n/a
36	chr19:55876060-55876110	AG10803	skin:	n/a
37	chr19:55876060-55876110	AG04450	lung:	fetal
38	chr19:55876060-55876110	GM06990	blood:	n/a
39	chr19:55876060-55876110	AG04449	skin:	fetal
40	chr19:55876060-55876110	SK-N-SH_RA	brain:	n/a
41	chr19:55876060-55876110	PFSK-1	brain:	n/a
42	chr19:55876060-55876110	GM19239	blood:	n/a
43	chr19:55876060-55876110	IMR90	lung:	fetal
44	chr19:55876060-55876110	NT2-D1	testis:	n/a
45	chr19:55876060-55876110	ProgFib	skin:	n/a
46	chr19:55876060-55876110	SAEC	small airway:	n/a
47	chr19:55876060-55876110	HUVEC	blood vessel:	n/a
48	chr19:55876060-55876110	Hepatocyte	liver:	n/a
49	chr19:55876060-55876110	K562	blood:	n/a
50	chr19:55876060-55876110	HCF	heart:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:55868105..55871088-chr19:55873603..55877567,3	MCF-7	breast:
2	chr19:55874602..55877064-chr19:55916927..55920725,3	K562	blood:
3	chr19:55874299..55876098-chr19:55878780..55880715,2	K562	blood:
4	chr19:55868108..55872228-chr19:55874382..55877630,4	K562	blood:
5	chr19:55865433..55867142-chr19:55875019..55877075,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM71E2	TF binding region
FAM71E2	CpG island
ENSG00000095752	Chromatin interaction
ENSG00000108106	Chromatin interaction
ENSG00000160471	Chromatin interaction
ENSG00000267706	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1065760	chr19:55721521-55929740	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
3	nsv912455	chr19:55725410-55879872	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv912456	chr19:55725410-55925500	Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
5	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
6	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
7	nsv912460	chr19:55814881-55897327	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
8	nsv912461	chr19:55845386-55897327	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
9	nsv470162	chr19:55845386-55902257	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
10	nsv912462	chr19:55845386-55925500	Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
11	nsv912463	chr19:55845386-56004901	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
12	nsv912464	chr19:55850269-55921164	Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
13	esv1799638	chr19:55850652-55883879	Weak transcription Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
14	nsv516199	chr19:55854313-55901099	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
15	nsv912465	chr19:55854313-55935184	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
16	nsv912466	chr19:55867037-55876074	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
17	nsv912467	chr19:55871019-55878521	Strong transcription Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
18	nsv912468	chr19:55872591-55883879	Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
19	nsv912469	chr19:55872591-55888598	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
20	nsv912470	chr19:55872591-55897170	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	79 gene(s)	inside rSNPs	diseases
21	nsv912471	chr19:55873726-55878521	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
22	nsv912472	chr19:55873726-55888598	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
23	nsv912473	chr19:55874642-56145428	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
24	nsv912474	chr19:55874986-55883879	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
25	nsv912475	chr19:55874986-55888598	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
26	nsv544085	chr19:55875808-55911275	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55866200-55880600	Weak transcription	Right Atrium	heart
2	chr19:55871400-55877000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr19:55871400-55880200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr19:55873400-55879800	Weak transcription	HSMM	muscle
5	chr19:55873600-55876200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr19:55874600-55879600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr19:55874800-55876600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr19:55874800-55877000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:55874800-55877400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr19:55874800-55877600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr19:55874800-55879800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr19:55875200-55876600	Weak transcription	A549	lung
13	chr19:55875400-55876200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr19:55875400-55876400	Enhancers	Osteobl	bone
15	chr19:55875600-55876200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr19:55875800-55876800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr19:55875800-55879800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr19:55876000-55876200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr19:55876000-55876200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr19:55876000-55876400	Genic enhancers	NH-A	brain
21	chr19:55876000-55879600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr19:55876000-55879600	Weak transcription	HSMMtube	muscle
23	chr19:55876000-55880200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links