Variant report

Variant	rs142345328
Chromosome Location	chr11:10314611-10314612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10314422..10317147-chr11:10327890..10331590,5	MCF-7	breast:
2	chr11:9807438..9810264-chr11:10314419..10316538,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	esv3437706	chr11:10313476-10317774	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10299400-10314800	Weak transcription	Small Intestine	intestine
2	chr11:10306600-10314800	Weak transcription	Aorta	Aorta
3	chr11:10308800-10315000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:10310000-10314800	Weak transcription	Left Ventricle	heart
5	chr11:10311400-10315000	Weak transcription	Lung	lung
6	chr11:10311400-10315200	Weak transcription	Spleen	Spleen
7	chr11:10311600-10314800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:10312000-10314800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:10312000-10314800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:10312000-10314800	Weak transcription	Esophagus	oesophagus
11	chr11:10312000-10314800	Weak transcription	Pancreas	Pancrea
12	chr11:10312200-10314800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:10312200-10315000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:10313200-10314800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:10313200-10314800	Enhancers	Stomach Mucosa	stomach
16	chr11:10313200-10315000	Weak transcription	Gastric	stomach
17	chr11:10313600-10314800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:10313600-10315200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:10313800-10314800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:10313800-10314800	Enhancers	Fetal Thymus	thymus
21	chr11:10313800-10315000	Flanking Active TSS	Hela-S3	cervix
22	chr11:10313800-10315000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr11:10314000-10314800	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:10314000-10316400	Active TSS	NHLF	lung
25	chr11:10314200-10315000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr11:10314200-10315000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr11:10314200-10315000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:10314200-10315200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr11:10314200-10316600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:10314200-10317000	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr11:10314400-10314800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:10314400-10314800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr11:10314400-10314800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:10314400-10314800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:10314400-10314800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr11:10314400-10314800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr11:10314400-10314800	Flanking Active TSS	Liver	Liver
38	chr11:10314400-10314800	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr11:10314400-10314800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:10314400-10314800	Enhancers	Brain Substantia Nigra	brain
41	chr11:10314400-10314800	Flanking Active TSS	Fetal Kidney	kidney
42	chr11:10314400-10314800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr11:10314400-10314800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr11:10314400-10314800	Flanking Active TSS	A549	lung
45	chr11:10314400-10314800	Flanking Active TSS	HepG2	liver
46	chr11:10314400-10314800	Flanking Active TSS	HSMM	muscle
47	chr11:10314400-10315000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr11:10314400-10315000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr11:10314400-10315000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:10314400-10315000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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