Variant report

Variant rs142364030
Chromosome Location chr1:228339068-228339069
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228329000-228339400 Weak transcription H9 Cell Line embryonic stem cell
2 chr1:228329000-228339600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:228331400-228341800 Weak transcription Psoas Muscle Psoas
4 chr1:228331600-228341000 Genic enhancers Fetal Thymus thymus
5 chr1:228332400-228339400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr1:228332800-228349800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:228333200-228342200 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:228333200-228344600 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:228333800-228350400 Weak transcription Primary B cells from cord blood blood
10 chr1:228334200-228340000 Genic enhancers Spleen Spleen
11 chr1:228335800-228339600 Enhancers Right Atrium heart
12 chr1:228335800-228339800 Enhancers Fetal Lung lung
13 chr1:228336000-228342000 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr1:228336200-228339400 Genic enhancers Muscle Satellite Cultured Cells --
15 chr1:228336400-228339200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr1:228336400-228339200 Enhancers HSMM muscle
17 chr1:228336400-228339400 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr1:228336400-228339600 Enhancers NHDF-Ad bronchial
19 chr1:228336600-228339400 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr1:228336600-228339600 Enhancers Left Ventricle heart
21 chr1:228336600-228340400 Enhancers Fetal Heart heart
22 chr1:228336600-228341600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr1:228336600-228342000 Weak transcription Primary T cells from cord blood blood
24 chr1:228336800-228339200 Enhancers HUES6 Cell Line embryonic stem cell
25 chr1:228336800-228339400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr1:228336800-228339400 Enhancers Stomach Mucosa stomach
27 chr1:228336800-228339600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:228336800-228340000 Enhancers Placenta Amnion Placenta Amnion
29 chr1:228336800-228350200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:228337000-228339200 Enhancers NH-A brain
31 chr1:228337000-228339400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr1:228337000-228339400 Enhancers Osteobl bone
33 chr1:228337000-228339800 Flanking Active TSS Stomach Smooth Muscle stomach
34 chr1:228337000-228341800 Weak transcription Primary hematopoietic stem cells blood
35 chr1:228337000-228342200 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr1:228337000-228343000 Weak transcription Primary monocytes fromperipheralblood blood
37 chr1:228337200-228339800 Enhancers K562 blood
38 chr1:228337200-228340000 Enhancers Fetal Muscle Leg muscle
39 chr1:228337200-228340400 Enhancers Fetal Muscle Trunk muscle
40 chr1:228337200-228342600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:228337200-228344400 Weak transcription Primary B cells from peripheral blood blood
42 chr1:228337400-228339200 Transcr. at gene 5' and 3' Fetal Stomach stomach
43 chr1:228337400-228340800 Weak transcription Dnd41 blood
44 chr1:228337400-228343000 Weak transcription Brain Germinal Matrix brain
45 chr1:228337600-228339400 Enhancers Skeletal Muscle Female skeletal muscle
46 chr1:228337600-228343600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:228337800-228339200 Flanking Active TSS Brain Anterior Caudate brain
48 chr1:228337800-228339600 Genic enhancers Thymus Thymus
49 chr1:228337800-228339800 Enhancers Ovary ovary
50 chr1:228337800-228340200 Enhancers Fetal Intestine Large intestine

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