Variant report

Variant	rs142377399
Chromosome Location	chr5:49414452-49414453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334856	chr5:49405642-49442693	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
2	esv3353509	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3365495	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
4	esv3403552	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3451841	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	esv997367	chr5:49405763-49441191	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv17894	chr5:49405763-49442098	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
8	esv19415	chr5:49405763-49485157	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv820439	chr5:49405763-49552643	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv15107	chr5:49405763-49562327	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv6051	chr5:49405841-49436199	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv598085	chr5:49406720-49439390	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a
13	esv3382902	chr5:49407431-49439369	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
14	nsv598086	chr5:49409485-49437600	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
15	nsv598087	chr5:49409485-49441601	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
16	esv3500810	chr5:49414412-49435207	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
17	esv3500811	chr5:49414412-49435207	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:49413800-49414600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:49413800-49414600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr5:49413800-49414600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr5:49413800-49414600	ZNF genes & repeats	Brain Hippocampus Middle	brain
5	chr5:49413800-49414600	ZNF genes & repeats	Fetal Heart	heart
6	chr5:49413800-49414600	ZNF genes & repeats	Stomach Mucosa	stomach
7	chr5:49414200-49414600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr5:49414200-49414600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr5:49414200-49414600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:49414200-49414600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:49414200-49414600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr5:49414200-49414600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr5:49414200-49414600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr5:49414200-49414600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:49414200-49414600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:49414200-49414600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:49414200-49414600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
18	chr5:49414200-49414600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:49414200-49414600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:49414200-49414600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:49414200-49414600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
22	chr5:49414200-49414600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
23	chr5:49414200-49414600	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr5:49414200-49414600	ZNF genes & repeats	Aorta	Aorta
25	chr5:49414200-49414600	ZNF genes & repeats	Brain Angular Gyrus	brain
26	chr5:49414200-49414600	ZNF genes & repeats	Brain Anterior Caudate	brain
27	chr5:49414200-49414600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
28	chr5:49414200-49414600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:49414200-49414600	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr5:49414200-49414600	ZNF genes & repeats	Colon Smooth Muscle	Colon
31	chr5:49414200-49414600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr5:49414200-49414600	ZNF genes & repeats	Fetal Brain Male	brain
33	chr5:49414200-49414600	ZNF genes & repeats	Fetal Kidney	kidney
34	chr5:49414200-49414600	ZNF genes & repeats	Fetal Lung	lung
35	chr5:49414200-49414600	ZNF genes & repeats	Left Ventricle	heart
36	chr5:49414200-49414600	ZNF genes & repeats	Pancreas	Pancrea
37	chr5:49414200-49414600	ZNF genes & repeats	Psoas Muscle	Psoas
38	chr5:49414200-49414600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
39	chr5:49414200-49414600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
40	chr5:49414200-49414600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
41	chr5:49414200-49414600	ZNF genes & repeats	Thymus	Thymus
42	chr5:49414200-49414600	ZNF genes & repeats	Spleen	Spleen
43	chr5:49414200-49414600	ZNF genes & repeats	Dnd41	blood
44	chr5:49414200-49414600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr5:49414200-49414600	ZNF genes & repeats	NH-A	brain
46	chr5:49414400-49414600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
47	chr5:49414400-49414600	ZNF genes & repeats	Liver	Liver
48	chr5:49414400-49414600	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
49	chr5:49414400-49414600	ZNF genes & repeats	Fetal Brain Female	brain
50	chr5:49414400-49414600	ZNF genes & repeats	Fetal Muscle Trunk	muscle

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