Variant report

Variant	rs142384176
Chromosome Location	chr12:56268540-56268541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
OLA1P3	TF binding region
ENSG00000205323	Chromatin interaction
ENSG00000135392	Chromatin interaction
ENSG00000182796	Chromatin interaction
ENSG00000123353	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv719	chr12:56246405-56290812	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1051961	chr12:56262220-56629427	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	284 gene(s)	inside rSNPs	diseases
3	esv3347258	chr12:56267734-56298106	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56267400-56269000	Weak transcription	Fetal Thymus	thymus
2	chr12:56267800-56268600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:56267800-56268600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:56267800-56268600	Enhancers	Brain Cingulate Gyrus	brain
5	chr12:56267800-56268800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:56268000-56268600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:56268000-56268600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:56268000-56270200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:56268000-56270200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:56268200-56269200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:56268200-56269200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:56268200-56269800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr12:56268200-56270200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr12:56268400-56269600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr12:56268400-56272200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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