Variant report

Variant	rs142396446
Chromosome Location	chr4:143194240-143194241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830099	chr4:143138257-143285055	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3341532	chr4:143194084-143194497	Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143181600-143195600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:143183000-143204800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143185400-143199000	Weak transcription	Psoas Muscle	Psoas
4	chr4:143186600-143199800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:143187400-143197200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:143187400-143199400	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:143187400-143199400	Weak transcription	NH-A	brain
8	chr4:143187400-143200400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:143187400-143203800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:143187400-143218600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:143187600-143194600	Weak transcription	NHLF	lung
12	chr4:143187600-143196000	Weak transcription	A549	lung
13	chr4:143187600-143200600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:143190600-143195800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:143191600-143194600	Weak transcription	HSMM	muscle
16	chr4:143191800-143195000	Weak transcription	HUVEC	blood vessel
17	chr4:143191800-143195800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:143192000-143194800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:143192000-143194800	Weak transcription	HSMMtube	muscle
20	chr4:143192000-143195200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:143192000-143195800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:143192000-143196200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:143192000-143210600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:143192000-143219400	Weak transcription	Dnd41	blood
25	chr4:143192200-143198800	Weak transcription	Primary T cells from cord blood	blood
26	chr4:143192200-143203800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr4:143192200-143206000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:143192800-143194400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:143192800-143196000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr4:143192800-143197200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr4:143192800-143199000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr4:143193600-143194800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:143193600-143196000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:143193600-143197800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:143193800-143196600	Enhancers	HMEC	breast
36	chr4:143194000-143195600	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr4:143194000-143196000	Enhancers	NHDF-Ad	bronchial
38	chr4:143194000-143196200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:143194000-143196400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:143194000-143196800	Enhancers	NHEK	skin
41	chr4:143194000-143200200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:143194200-143194400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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