Variant report

Variant	rs142400566
Chromosome Location	chr16:48644109-48644110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:48642624..48645570-chr16:48653678..48655637,3	MCF-7	breast:
2	chr16:48643658..48644234-chr6:26157660..26158431,2	Hela-S3	cervix:
3	chr16:48417371..48420713-chr16:48642499..48645364,3	K562	blood:
4	chr16:48643546..48644221-chr8:80941965..80942535,2	Hela-S3	cervix:
5	chr16:48636374..48639117-chr16:48642848..48644889,3	MCF-7	breast:
6	chr16:48278224..48281613-chr16:48642327..48645557,3	MCF-7	breast:
7	chr16:48418015..48420544-chr16:48643775..48645908,3	MCF-7	breast:
8	chr16:48398982..48401730-chr16:48643542..48645764,2	K562	blood:
9	chr16:48611677..48614965-chr16:48642822..48645500,3	MCF-7	breast:
10	chr1:45186967..45187640-chr16:48643672..48644651,2	HCT-116	colon:
11	chr16:48591602..48593821-chr16:48642725..48645233,2	MCF-7	breast:
12	chr16:48417956..48420702-chr16:48642244..48644303,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000243609	Chromatin interaction
ENSG00000121270	Chromatin interaction
ENSG00000102910	Chromatin interaction
ENSG00000261267	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000199377	Chromatin interaction
ENSG00000259912	Chromatin interaction
ENSG00000147586	Chromatin interaction
ENSG00000102921	Chromatin interaction
ENSG00000196470	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405809	chr16:48642876-48645424	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3422336	chr16:48643001-48645099	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48641200-48644600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:48641800-48644400	Active TSS	Stomach Mucosa	stomach
3	chr16:48641800-48644400	Active TSS	HSMMtube	muscle
4	chr16:48641800-48644800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr16:48641800-48644800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:48641800-48644800	Active TSS	HSMM	muscle
7	chr16:48641800-48645200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr16:48642000-48644600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr16:48642000-48644600	Active TSS	Esophagus	oesophagus
10	chr16:48642000-48644800	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr16:48642200-48644800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr16:48642200-48644800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:48642200-48644800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr16:48642400-48644400	Active TSS	Lung	lung
15	chr16:48642400-48644600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr16:48642400-48644600	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr16:48642400-48644600	Active TSS	Ovary	ovary
18	chr16:48642400-48644600	Active TSS	GM12878-XiMat	blood
19	chr16:48642400-48644800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr16:48642600-48644200	Active TSS	Small Intestine	intestine
21	chr16:48642600-48644400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr16:48642600-48644400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr16:48642600-48644400	Active TSS	Duodenum Mucosa	Duodenum
24	chr16:48642600-48644400	Active TSS	Fetal Intestine Small	intestine
25	chr16:48642600-48644400	Active TSS	NHEK	skin
26	chr16:48642600-48644600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr16:48642600-48644600	Active TSS	Right Ventricle	heart
28	chr16:48642600-48644600	Active TSS	NHLF	lung
29	chr16:48642600-48644800	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr16:48642600-48644800	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr16:48642600-48644800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr16:48642600-48644800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr16:48642600-48644800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr16:48642600-48644800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr16:48642600-48644800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr16:48642600-48645000	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr16:48642800-48644200	Active TSS	NH-A	brain
38	chr16:48642800-48644400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr16:48642800-48644400	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr16:48642800-48644400	Active TSS	Gastric	stomach
41	chr16:48642800-48644400	Active TSS	NHDF-Ad	bronchial
42	chr16:48642800-48644600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr16:48642800-48644600	Active TSS	Brain Angular Gyrus	brain
44	chr16:48642800-48644600	Active TSS	Brain Substantia Nigra	brain
45	chr16:48642800-48644800	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr16:48642800-48644800	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr16:48642800-48644800	Active TSS	Colon Smooth Muscle	Colon
48	chr16:48642800-48644800	Active TSS	Fetal Kidney	kidney
49	chr16:48642800-48644800	Active TSS	Rectal Smooth Muscle	rectum
50	chr16:48642800-48644800	Active TSS	Osteobl	bone

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