Variant report

Variant	rs142402448
Chromosome Location	chr3:160748971-160748972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160746924..160750622-chr3:160787755..160791172,3	MCF-7	breast:
2	chr3:160739507..160741947-chr3:160747617..160749551,2	MCF-7	breast:
3	chr3:160748601..160749476-chr3:160818403..160819285,3	MCF-7	breast:
4	chr3:160748629..160749475-chr3:161057341..161057842,2	MCF-7	breast:
5	chr3:160748960..160749535-chr3:160759816..160760384,2	MCF-7	breast:
6	chr3:160717602..160719198-chr3:160748866..160750938,2	MCF-7	breast:
7	chr3:160748438..160750159-chr3:160785119..160786787,2	MCF-7	breast:
8	chr3:160747461..160750414-chr3:161128370..161130411,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv965126	chr3:160748670-160750148	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:160746600-160749000	Weak transcription	Psoas Muscle	Psoas
3	chr3:160748200-160749400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:160748800-160749200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:160748800-160749800	Enhancers	Liver	Liver
6	chr3:160748800-160749800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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