Variant report

Variant	rs142416604
Chromosome Location	chr4:103782603-103782604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103781973..103785521-chr4:103788128..103792048,4	MCF-7	breast:
2	chr4:103741330..103752134-chr4:103778393..103796398,92	K562	blood:
3	chr4:103746438..103750337-chr4:103782400..103786138,6	MCF-7	breast:
4	chr4:103736995..103756245-chr4:103778393..103800311,117	K562	blood:

Variant related genes	Relation type
ENSG00000145354	Chromatin interaction
ENSG00000246560	Chromatin interaction
ENSG00000109332	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594957	chr4:103728010-103870091	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	esv1802717	chr4:103765156-103870091	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv10541	chr4:103778446-103785639	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv21280	chr4:103779278-103783640	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv594960	chr4:103780496-103782764	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv594961	chr4:103780496-103783359	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv594962	chr4:103780496-103783412	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2757946	chr4:103780705-104057321	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	esv2759270	chr4:103780705-104057321	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv594963	chr4:103780840-103782764	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv594964	chr4:103780840-103782963	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv594965	chr4:103780840-103783359	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv594966	chr4:103780840-103783412	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv594967	chr4:103780922-103782764	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv594968	chr4:103780922-103782963	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
16	nsv594969	chr4:103781574-103783412	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
17	nsv594970	chr4:103781963-103782764	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
18	nsv594971	chr4:103781963-103783359	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
19	nsv594972	chr4:103781963-103783412	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	nsv594973	chr4:103782017-103782963	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	nsv594974	chr4:103782017-103783359	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
22	nsv594975	chr4:103782017-103783412	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
23	nsv594976	chr4:103782074-103783359	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
24	nsv594977	chr4:103782126-103783412	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103750800-103788000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:103765000-103783600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:103765400-103788800	Weak transcription	Left Ventricle	heart
4	chr4:103779000-103787600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:103780000-103788000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:103780200-103782800	ZNF genes & repeats	Dnd41	blood
7	chr4:103780200-103789200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:103780400-103788800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:103780800-103788000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:103781000-103783000	Weak transcription	Brain Angular Gyrus	brain
11	chr4:103781000-103785000	Weak transcription	Primary T cells from cord blood	blood
12	chr4:103781000-103788800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:103781000-103789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:103781200-103785800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:103781200-103788600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:103781600-103783400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:103781800-103783400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr4:103781800-103784400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:103781800-103788000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:103781800-103789600	Weak transcription	Fetal Brain Male	brain
21	chr4:103782000-103783000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr4:103782000-103788000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:103782200-103785000	Weak transcription	Liver	Liver
24	chr4:103782200-103788600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:103782200-103788600	Weak transcription	Fetal Thymus	thymus
26	chr4:103782200-103788800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:103782200-103788800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:103782400-103782800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:103782400-103783200	Enhancers	Primary hematopoietic stem cells	blood
30	chr4:103782400-103784000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:103782400-103784200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:103782400-103788800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:103782400-103788800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:103782400-103788800	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:103782400-103789200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:103782400-103789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:103782600-103783600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:103782600-103784400	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr4:103782600-103788400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr4:103782600-103789000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links