Variant report

Variant	rs142420779
Chromosome Location	chr11:74688780-74688781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74687560..74690870-chr11:74698064..74700699,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162139	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv972047	chr11:74688078-74690431	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74661800-74699200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:74661800-74699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:74662200-74699600	Weak transcription	Esophagus	oesophagus
4	chr11:74662400-74691400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:74667600-74689000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:74667800-74692200	Strong transcription	Dnd41	blood
7	chr11:74672000-74692000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:74672400-74690600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:74673400-74691000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:74673400-74694400	Weak transcription	Stomach Mucosa	stomach
11	chr11:74673800-74691600	Strong transcription	Primary B cells from peripheral blood	blood
12	chr11:74674000-74692200	Strong transcription	GM12878-XiMat	blood
13	chr11:74674400-74690600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:74674600-74692000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:74674600-74692000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:74674800-74692400	Strong transcription	Fetal Thymus	thymus
17	chr11:74675000-74692000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:74675000-74692200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr11:74675200-74691400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:74675200-74691400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:74675200-74692200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:74675400-74689600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:74675600-74692000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:74675600-74692200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:74675600-74699400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:74675800-74692200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr11:74676400-74689000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:74676600-74690200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:74676600-74690200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:74676600-74691800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:74676600-74691800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:74677000-74691600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:74677200-74689600	Strong transcription	Fetal Lung	lung
34	chr11:74677200-74691400	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:74677200-74692400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:74677200-74692400	Strong transcription	Fetal Muscle Leg	muscle
37	chr11:74677200-74692600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:74677200-74692600	Strong transcription	Thymus	Thymus
39	chr11:74677200-74693400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:74677600-74691200	Strong transcription	Duodenum Mucosa	Duodenum
41	chr11:74677600-74693800	Strong transcription	HSMM	muscle
42	chr11:74677800-74689600	Strong transcription	NHLF	lung
43	chr11:74678600-74699200	Weak transcription	Spleen	Spleen
44	chr11:74679800-74689600	Strong transcription	Primary hematopoietic stem cells	blood
45	chr11:74679800-74691600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr11:74680200-74690200	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:74680200-74691000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:74680200-74691200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:74680200-74692200	Strong transcription	Primary T cells from cord blood	blood
50	chr11:74680400-74691400	Strong transcription	Placenta	Placenta

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