Variant report

Variant	rs142425981
Chromosome Location	chr3:142608551-142608552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142605846..142608751-chr3:142718093..142722238,5	K562	blood:

Variant related genes	Relation type
ENSG00000268129	Chromatin interaction
ENSG00000163714	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv437342	chr3:142605233-142622834	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv437343	chr3:142607487-142622834	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142606600-142608600	Active TSS	Right Ventricle	heart
2	chr3:142606600-142609000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:142606800-142608600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
4	chr3:142606800-142608600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:142606800-142608800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:142607000-142608600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:142607000-142608600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:142607000-142608600	Active TSS	Aorta	Aorta
9	chr3:142607000-142608600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr3:142607000-142608600	Active TSS	Hela-S3	cervix
11	chr3:142607000-142608600	Active TSS	NHLF	lung
12	chr3:142607000-142608800	Active TSS	H9 Cell Line	embryonic stem cell
13	chr3:142607000-142609200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:142607200-142608600	Active TSS	Brain Cingulate Gyrus	brain
15	chr3:142607200-142608600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
16	chr3:142607200-142608600	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr3:142607400-142608600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr3:142607400-142608600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr3:142607400-142608600	Active TSS	Brain Angular Gyrus	brain
20	chr3:142607600-142608600	Active TSS	Muscle Satellite Cultured Cells	--
21	chr3:142607600-142608600	Bivalent/Poised TSS	Fetal Lung	lung
22	chr3:142607600-142608600	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
23	chr3:142607600-142608800	Active TSS	NH-A	brain
24	chr3:142607600-142609600	Active TSS	Osteobl	bone
25	chr3:142607800-142608600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:142607800-142608600	Active TSS	Liver	Liver
27	chr3:142607800-142608600	Active TSS	Ovary	ovary
28	chr3:142608000-142608600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:142608000-142608600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
30	chr3:142608000-142608600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:142608000-142608600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
32	chr3:142608000-142608600	Flanking Active TSS	Placenta	Placenta
33	chr3:142608000-142608600	Active TSS	Psoas Muscle	Psoas
34	chr3:142608000-142608600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
35	chr3:142608000-142608600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
36	chr3:142608000-142608800	Active TSS	Right Atrium	heart
37	chr3:142608200-142608600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
38	chr3:142608200-142608600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:142608200-142608600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
40	chr3:142608200-142608600	Active TSS	Fetal Brain Female	brain
41	chr3:142608200-142608600	Bivalent Enhancer	Fetal Heart	heart
42	chr3:142608200-142608800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:142608200-142608800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
44	chr3:142608200-142608800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:142608200-142608800	Bivalent/Poised TSS	NHDF-Ad	bronchial
46	chr3:142608200-142609200	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr3:142608200-142610600	Weak transcription	K562	blood
48	chr3:142608400-142608600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:142608400-142608600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
50	chr3:142608400-142608600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell

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