Variant report

Variant	rs142460887
Chromosome Location	chr9:16219479-16219480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:16219432-16219632	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16207216..16210158-chr9:16217890..16219835,2	MCF-7	breast:

Variant related genes	Relation type
C9orf92	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv892641	chr9:16218659-16242088	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16215000-16223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16215400-16220800	Weak transcription	Adipose Nuclei	Adipose
3	chr9:16215400-16222000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:16215600-16221200	Weak transcription	Fetal Kidney	kidney
5	chr9:16215800-16221400	Weak transcription	Right Atrium	heart
6	chr9:16217000-16221200	Weak transcription	Fetal Lung	lung
7	chr9:16217000-16221200	Weak transcription	Ovary	ovary
8	chr9:16217200-16221400	Weak transcription	A549	lung
9	chr9:16218000-16221400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:16218000-16222600	Enhancers	NHDF-Ad	bronchial
11	chr9:16218400-16219800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:16218400-16221200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:16218600-16223400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:16218600-16233600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:16218800-16219600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:16218800-16221400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:16218800-16221400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:16219000-16219800	Enhancers	HMEC	breast
19	chr9:16219000-16221200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:16219000-16221400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:16219000-16221400	Weak transcription	NHLF	lung
22	chr9:16219000-16223600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr9:16219200-16221200	Weak transcription	Osteobl	bone
24	chr9:16219200-16221600	Weak transcription	Muscle Satellite Cultured Cells	--

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