Variant report

Variant	rs1424665
Chromosome Location	chr1:75159239-75159240
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75114474..75116619-chr1:75157243..75159501,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10082144	1.00[EUR][1000 genomes]
rs10493548	1.00[EUR][1000 genomes]
rs11810971	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095729	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs17095737	1.00[EUR][1000 genomes]
rs17095776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2345434	1.00[EUR][1000 genomes]
rs59766503	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61546468	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv830259	chr1:75089177-75241062	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv461995	chr1:75133142-75166623	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv546578	chr1:75133142-75166623	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2762153	chr1:75142205-75171211	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv871152	chr1:75152186-75197533	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
8	esv1851105	chr1:75152186-75302921	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75141800-75179600	Weak transcription	Aorta	Aorta
2	chr1:75156000-75167600	Weak transcription	Liver	Liver
3	chr1:75156000-75183400	Weak transcription	Fetal Heart	heart
4	chr1:75156200-75167800	Weak transcription	Fetal Lung	lung
5	chr1:75156200-75168000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:75156200-75168200	Weak transcription	Ovary	ovary
7	chr1:75156200-75169200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:75156200-75169200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:75156400-75167200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:75158400-75160000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:75158400-75160000	Enhancers	HMEC	breast
12	chr1:75159000-75159400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:75159000-75159400	Flanking Active TSS	NH-A	brain
14	chr1:75159000-75159400	Enhancers	NHEK	skin
15	chr1:75159000-75159600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:75159000-75159800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:75159000-75167600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr1:75159200-75159400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:75159200-75159600	Flanking Active TSS	A549	lung
20	chr1:75159200-75160000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:75159200-75160000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:75159200-75160000	Enhancers	Osteobl	bone

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