Variant report

Variant	rs142483661
Chromosome Location	chr4:110569982-110569983
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110568027..110570287-chr4:110582225..110584531,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv822683	chr4:110569946-110570796	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110533000-110573000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:110546600-110580600	Weak transcription	Thymus	Thymus
3	chr4:110565800-110576600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:110567200-110570000	Weak transcription	Fetal Thymus	thymus
5	chr4:110567400-110570000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr4:110567800-110570000	Weak transcription	HSMM	muscle
7	chr4:110568400-110573600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:110569000-110570000	Enhancers	Primary B cells from peripheral blood	blood
9	chr4:110569000-110570800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:110569400-110570400	Active TSS	Primary T cells fromperipheralblood	blood
11	chr4:110569400-110570600	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr4:110569400-110571200	Flanking Active TSS	GM12878-XiMat	blood
13	chr4:110569600-110570000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:110569600-110570200	Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr4:110569600-110570800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:110569600-110572200	Weak transcription	Primary B cells from cord blood	blood
17	chr4:110569800-110570000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr4:110569800-110570000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr4:110569800-110570200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:110569800-110570200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr4:110569800-110570200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr4:110569800-110570200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr4:110569800-110570400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:110569800-110570400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:110569800-110570800	Enhancers	HUVEC	blood vessel
26	chr4:110569800-110571400	ZNF genes & repeats	Dnd41	blood
27	chr4:110569800-110573200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr4:110569800-110573200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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