Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10141297	0.81[EUR][1000 genomes]
rs10149537	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11847149	1.00[CHD][hapmap]
rs1364607	0.81[EUR][1000 genomes]
rs1424844	1.00[CHD][hapmap]
rs1424849	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170252	1.00[ASW][hapmap]
rs17764475	1.00[CHD][hapmap]
rs17836266	1.00[CHD][hapmap]
rs1834243	0.95[AFR][1000 genomes]
rs1966677	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1988873	0.86[EUR][1000 genomes]
rs2013792	0.81[EUR][1000 genomes]
rs221419	0.95[AFR][1000 genomes]
rs2371100	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6574510	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7147997	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8022699	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9652378	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs977319	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs977321	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79981800-80009600	Weak transcription	Aorta	Aorta
2	chr14:80001400-80010000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:80001400-80010200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:80001600-80010200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:80005600-80011600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:80008200-80009000	Enhancers	NH-A	brain
7	chr14:80008400-80009000	Enhancers	Colon Smooth Muscle	Colon
8	chr14:80008400-80009600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:80008400-80010000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr14:80008400-80010800	Enhancers	Hela-S3	cervix
11	chr14:80008400-80013000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:80008600-80009600	Enhancers	HSMMtube	muscle
13	chr14:80008600-80010000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:80008800-80009200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:80008800-80011800	Enhancers	Stomach Smooth Muscle	stomach
16	chr14:80008800-80012000	Enhancers	Osteobl	bone

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