Variant report

Variant	rs142487402
Chromosome Location	chr3:146187655-146187656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:146186935-146187700	A549	lung:	n/a	n/a
2	POLR2A	chr3:146186860-146188567	Hela-S3	cervix:	n/a	n/a
3	SMARCB1	chr3:146186980-146187827	Hela-S3	cervix:	n/a	n/a
4	ZNF384	chr3:146187540-146187987	K562	blood:	n/a	n/a
5	RAD21	chr3:146187038-146187806	H1-hESC	embryonic stem cell:	n/a	chr3:146187486-146187496
6	POLR2A	chr3:146186896-146187776	GM18526	blood:	n/a	n/a
7	MAZ	chr3:146187093-146187817	Hela-S3	cervix:	n/a	chr3:146187570-146187579 chr3:146187177-146187187 chr3:146187349-146187358
8	E2F6	chr3:146187043-146187771	K562	blood:	n/a	n/a
9	CCNT2	chr3:146186907-146187771	K562	blood:	n/a	n/a
10	MAX	chr3:146186962-146187817	A549	lung:	n/a	chr3:146187570-146187579 chr3:146187177-146187187 chr3:146187349-146187358
11	E2F6	chr3:146187048-146187762	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr3:146186968-146187773	A549	lung:	n/a	n/a
13	POLR2A	chr3:146187437-146187762	A549	lung:	n/a	n/a
14	MAX	chr3:146187017-146187680	H1-hESC	embryonic stem cell:	n/a	chr3:146187570-146187579 chr3:146187177-146187187 chr3:146187349-146187358
15	TAF7	chr3:146187080-146187742	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr3:146186964-146187845	PBDE	blood:	n/a	n/a
17	BHLHE40	chr3:146186860-146187744	K562	blood:	n/a	chr3:146187589-146187605 chr3:146187584-146187600
18	SIN3A	chr3:146186936-146187774	H1-hESC	embryonic stem cell:	n/a	chr3:146187598-146187609
19	ELK1	chr3:146187578-146187815	Hela-S3	cervix:	n/a	n/a
20	ZEB1	chr3:146186854-146187655	GM12878	blood:	n/a	n/a
21	MAX	chr3:146186672-146187886	K562	blood:	n/a	chr3:146187570-146187579 chr3:146187177-146187187 chr3:146187349-146187358
22	ELF1	chr3:146187013-146187915	K562	blood:	n/a	chr3:146187384-146187395 chr3:146187385-146187394
23	POLR2A	chr3:146187026-146187666	A549	lung:	n/a	n/a
24	TCF3	chr3:146186998-146187727	GM12878	blood:	n/a	chr3:146187363-146187377
25	ZBTB7A	chr3:146187034-146187758	K562	blood:	n/a	chr3:146187548-146187557
26	MAX	chr3:146187075-146187809	H1-hESC	embryonic stem cell:	n/a	chr3:146187570-146187579 chr3:146187177-146187187 chr3:146187349-146187358
27	POLR2A	chr3:146186136-146187873	K562	blood:	n/a	n/a
28	RCOR1	chr3:146186669-146188613	K562	blood:	n/a	n/a
29	RFX5	chr3:146187574-146187883	Hela-S3	cervix:	n/a	n/a
30	ZKSCAN1	chr3:146187223-146187843	Hela-S3	cervix:	n/a	n/a
31	UBTF	chr3:146187070-146187799	K562	blood:	n/a	n/a
32	IRF1	chr3:146186564-146187968	K562	blood:	n/a	chr3:146187127-146187147 chr3:146187174-146187188 chr3:146187448-146187461 chr3:146187127-146187140 chr3:146187448-146187461 chr3:146187125-146187139 chr3:146187127-146187141
33	ELK4	chr3:146187258-146187749	Hela-S3	cervix:	n/a	chr3:146187385-146187396
34	CREB1	chr3:146187039-146187708	A549	lung:	n/a	n/a
35	CHD2	chr3:146187095-146187754	Hela-S3	cervix:	n/a	n/a
36	HEY1	chr3:146186872-146187855	K562	blood:	n/a	chr3:146187527-146187542 chr3:146187591-146187606
37	TBP	chr3:146186929-146187950	K562	blood:	n/a	n/a
38	POLR2A	chr3:146187551-146187780	H1-hESC	embryonic stem cell:	n/a	n/a
39	MAX	chr3:146187141-146187884	Hela-S3	cervix:	n/a	chr3:146187570-146187579 chr3:146187177-146187187 chr3:146187349-146187358
40	POLR2A	chr3:146186934-146187830	GM18951	blood:	n/a	n/a
41	POLR2A	chr3:146186644-146188093	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr3:146186874-146187817	GM19099	blood:	n/a	n/a
43	E2F6	chr3:146186787-146187915	K562	blood:	n/a	n/a
44	MAX	chr3:146186682-146187882	K562	blood:	n/a	chr3:146187570-146187579 chr3:146187177-146187187 chr3:146187349-146187358
45	PML	chr3:146186975-146187954	K562	blood:	n/a	n/a
46	RCOR1	chr3:146187096-146187882	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr3:146186733-146187937	GM12891	blood:	n/a	n/a
48	MAX	chr3:146186898-146188015	A549	lung:	n/a	chr3:146187570-146187579 chr3:146187177-146187187 chr3:146187349-146187358
49	POLR2A	chr3:146186662-146187909	K562	blood:	n/a	n/a
50	SMC3	chr3:146187625-146187873	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146187253..146187846-chr6:27804931..27805821,2	Hela-S3	cervix:

Variant related genes	Relation type
PLSCR2	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3448053	chr3:146186791-146262066	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3523751	chr3:146186838-146261806	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv3523753	chr3:146186838-146261806	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv2496437	chr3:146186902-146262961	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146186400-146188800	Active TSS	Rectal Mucosa Donor 31	rectum
2	chr3:146186600-146188000	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr3:146186600-146188000	Active TSS	Primary T cells from cord blood	blood
4	chr3:146186600-146188000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:146186600-146188600	Active TSS	Duodenum Mucosa	Duodenum
6	chr3:146186800-146187800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr3:146186800-146187800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr3:146186800-146187800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:146186800-146187800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:146186800-146187800	Active TSS	Liver	Liver
11	chr3:146186800-146187800	Active TSS	Colonic Mucosa	Colon
12	chr3:146186800-146187800	Active TSS	Fetal Intestine Large	intestine
13	chr3:146186800-146187800	Active TSS	Fetal Intestine Small	intestine
14	chr3:146186800-146188000	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr3:146186800-146188000	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr3:146186800-146188000	Flanking Active TSS	Primary B cells from peripheral blood	blood
17	chr3:146186800-146188000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr3:146186800-146188000	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr3:146186800-146188000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr3:146186800-146188000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:146186800-146188000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:146186800-146188000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:146186800-146188000	Active TSS	Brain Angular Gyrus	brain
24	chr3:146186800-146188000	Active TSS	Brain Anterior Caudate	brain
25	chr3:146186800-146188000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:146186800-146188000	Active TSS	Fetal Kidney	kidney
27	chr3:146186800-146188000	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr3:146187000-146187800	Active TSS	H9 Cell Line	embryonic stem cell
29	chr3:146187000-146187800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:146187000-146187800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
31	chr3:146187000-146187800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr3:146187000-146187800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:146187000-146187800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:146187000-146187800	Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr3:146187000-146187800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:146187000-146187800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr3:146187000-146187800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr3:146187000-146187800	Active TSS	Aorta	Aorta
39	chr3:146187000-146187800	Active TSS	Brain Substantia Nigra	brain
40	chr3:146187000-146187800	Active TSS	Fetal Heart	heart
41	chr3:146187000-146187800	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr3:146187000-146187800	Active TSS	NH-A	brain
43	chr3:146187000-146187800	Active TSS	NHEK	skin
44	chr3:146187000-146188000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:146187000-146188000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr3:146187000-146188000	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr3:146187000-146188000	Active TSS	Brain Cingulate Gyrus	brain
48	chr3:146187000-146188000	Active TSS	Brain Germinal Matrix	brain
49	chr3:146187000-146188000	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr3:146187000-146188000	Active TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links