Variant report

Variant	rs142492409
Chromosome Location	chr3:56041765-56041766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012098	chr3:56040905-56055908	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56033000-56052000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:56033200-56046800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56039200-56041800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:56039800-56052400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:56041400-56041800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:56041400-56041800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:56041400-56041800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:56041400-56046600	Weak transcription	Fetal Brain Female	brain
9	chr3:56041600-56044400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:56041600-56054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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