Variant report

Variant	rs142494273
Chromosome Location	chr5:179213621-179213622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179127269..179130217-chr5:179212553..179215180,2	K562	blood:
2	chr5:179192837..179195567-chr5:179212671..179216209,3	K562	blood:
3	chr5:179206337..179209276-chr5:179211151..179214245,3	K562	blood:
4	chr5:179211965..179215539-chr5:179247804..179250502,3	K562	blood:
5	chr5:179192355..179194197-chr5:179212856..179215229,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161011	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949554	chr5:178832325-179309513	Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
2	nsv883270	chr5:178951106-179350387	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
3	nsv531997	chr5:179107599-179588082	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	339 gene(s)	inside rSNPs	diseases
4	nsv469579	chr5:179184831-179360191	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
5	nsv883274	chr5:179186397-179310330	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv518964	chr5:179193598-179227286	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
7	nsv883275	chr5:179193598-179267783	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
8	nsv883276	chr5:179193598-179310330	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
9	nsv883277	chr5:179193598-179350387	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
10	nsv823361	chr5:179213324-179251243	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179199800-179214000	Weak transcription	Fetal Brain Male	brain
2	chr5:179202000-179221800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:179203400-179218200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:179203400-179221600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:179203600-179219600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:179203600-179220400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:179203600-179222000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:179204000-179221200	Weak transcription	Small Intestine	intestine
9	chr5:179205000-179218800	Weak transcription	Right Atrium	heart
10	chr5:179205200-179220600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:179205200-179221800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:179206000-179220200	Weak transcription	Ovary	ovary
13	chr5:179206400-179214600	Weak transcription	HepG2	liver
14	chr5:179206400-179219200	Weak transcription	Gastric	stomach
15	chr5:179207000-179220200	Weak transcription	GM12878-XiMat	blood
16	chr5:179207200-179215200	Weak transcription	HSMMtube	muscle
17	chr5:179207200-179218600	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:179207200-179218800	Weak transcription	Adipose Nuclei	Adipose
19	chr5:179207200-179220600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:179207400-179215200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:179207400-179218600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:179207400-179219400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:179207400-179221000	Weak transcription	Brain Substantia Nigra	brain
24	chr5:179207600-179218800	Weak transcription	Fetal Lung	lung
25	chr5:179207600-179219200	Weak transcription	Colonic Mucosa	Colon
26	chr5:179207600-179219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:179207600-179219400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:179207600-179220000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:179207600-179220200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr5:179207600-179220200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr5:179207600-179220200	Weak transcription	Pancreas	Pancrea
32	chr5:179207600-179220600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:179207600-179220800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr5:179207600-179221200	Weak transcription	Fetal Intestine Large	intestine
35	chr5:179207600-179222200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:179207600-179222600	Weak transcription	Aorta	Aorta
37	chr5:179207800-179215200	Weak transcription	Liver	Liver
38	chr5:179207800-179216200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:179207800-179218200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:179207800-179219200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr5:179207800-179220200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr5:179207800-179220200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:179207800-179220400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr5:179207800-179220400	Weak transcription	Brain Angular Gyrus	brain
45	chr5:179207800-179220400	Weak transcription	HSMM	muscle
46	chr5:179207800-179220600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:179207800-179222200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:179208000-179215000	Weak transcription	NH-A	brain
49	chr5:179208000-179219400	Weak transcription	Primary B cells from cord blood	blood
50	chr5:179208000-179220200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links