Variant report

Variant	rs142505241
Chromosome Location	chr10:4554699-4554700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv549862	chr10:4554018-4593307	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1040910	chr10:4554674-4606939	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4541600-4554800	Weak transcription	NHLF	lung
2	chr10:4548600-4554800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:4548800-4555000	Weak transcription	Osteobl	bone
4	chr10:4552000-4556600	Weak transcription	Fetal Thymus	thymus
5	chr10:4552400-4555000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:4552800-4555200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:4553200-4555400	Enhancers	Fetal Lung	lung
8	chr10:4553200-4558400	Enhancers	NHDF-Ad	bronchial
9	chr10:4553600-4555000	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:4553600-4555800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:4553800-4554800	Weak transcription	NHEK	skin
12	chr10:4553800-4555000	Weak transcription	Fetal Stomach	stomach
13	chr10:4553800-4555200	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:4554000-4555000	Weak transcription	Fetal Kidney	kidney
15	chr10:4554000-4555400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:4554200-4557200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:4554600-4555000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:4554600-4555600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:4554600-4556200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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