Variant report

Variant	rs1425152
Chromosome Location	chr11:10649161-10649162
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10648702..10650502-chr11:10654956..10657531,2	K562	blood:

Variant related genes	Relation type
ENSG00000072952	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10840446	0.81[CEU][hapmap]
rs11042895	0.92[CEU][hapmap]
rs2278124	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2278125	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1425152	MRVI1	cis	normal skin	skin_eQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10650800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:10637800-10659200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:10639800-10661600	Weak transcription	Gastric	stomach
6	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
7	chr11:10643600-10652400	Strong transcription	NHLF	lung
8	chr11:10643600-10653400	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:10644000-10659600	Weak transcription	Osteobl	bone
10	chr11:10645000-10649200	Genic enhancers	Stomach Smooth Muscle	stomach
11	chr11:10646000-10649800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:10646000-10649800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:10646000-10649800	Weak transcription	Thymus	Thymus
14	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
16	chr11:10646200-10649800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:10646200-10649800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:10646200-10649800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:10646200-10661400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:10646400-10649400	Weak transcription	Fetal Thymus	thymus
22	chr11:10646400-10649600	Weak transcription	Primary T cells from cord blood	blood
23	chr11:10646400-10649800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:10646400-10650000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:10646400-10659400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:10646600-10649800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:10646800-10649800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr11:10646800-10650400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
30	chr11:10647200-10653000	Weak transcription	Esophagus	oesophagus
31	chr11:10647200-10659000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:10647400-10649800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:10647400-10649800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:10647400-10659200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:10647400-10659200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:10647600-10649400	Weak transcription	Primary B cells from cord blood	blood
37	chr11:10647600-10649800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:10647600-10650000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:10647600-10650000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:10647600-10651000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr11:10647800-10656800	Strong transcription	Aorta	Aorta
42	chr11:10647800-10658000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:10648000-10649400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:10648000-10650200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:10648000-10651200	Weak transcription	Placenta	Placenta
46	chr11:10648000-10651200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:10648000-10653600	Strong transcription	Ovary	ovary
48	chr11:10648000-10658400	Weak transcription	Brain Anterior Caudate	brain
49	chr11:10648000-10659200	Weak transcription	Colonic Mucosa	Colon
50	chr11:10648000-10661200	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links