Variant report

Variant	rs142522859
Chromosome Location	chr22:29058916-29058917
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29057363..29060342-chr22:29137660..29139710,2	MCF-7	breast:
2	chr22:29048724..29050246-chr22:29057415..29059766,2	K562	blood:

Variant related genes	Relation type
ENSG00000183765	Chromatin interaction
ENSG00000100209	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv459867	chr22:28993183-29109036	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv588881	chr22:28993183-29109036	Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1061684	chr22:29026341-29088590	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv9895	chr22:29029961-29184277	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv829148	chr22:29058867-29066285	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29046000-29059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr22:29046400-29073800	Weak transcription	Ovary	ovary
3	chr22:29049000-29059000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr22:29049400-29059200	Weak transcription	Fetal Muscle Leg	muscle
5	chr22:29052600-29074600	Weak transcription	Colon Smooth Muscle	Colon
6	chr22:29053400-29066800	Weak transcription	Fetal Lung	lung
7	chr22:29056800-29074600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:29057600-29070200	Weak transcription	Fetal Stomach	stomach
9	chr22:29058000-29070200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr22:29058200-29059200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr22:29058600-29059200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr22:29058600-29059200	Active TSS	K562	blood
13	chr22:29058600-29059400	Active TSS	A549	lung
14	chr22:29058800-29059000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr22:29058800-29059200	Active TSS	Liver	Liver
16	chr22:29058800-29059200	Active TSS	Duodenum Mucosa	Duodenum
17	chr22:29058800-29059200	Active TSS	HepG2	liver
18	chr22:29058800-29059400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr22:29058800-29059400	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr22:29058800-29059400	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr22:29058800-29059400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr22:29058800-29059400	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr22:29058800-29059400	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr22:29058800-29059400	Active TSS	Hela-S3	cervix
25	chr22:29058800-29059400	Active TSS	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links