Variant report

Variant	rs142546301
Chromosome Location	chr15:31204838-31204839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31195856..31199381-chr15:31202178..31205156,3	MCF-7	breast:
2	chr15:31200708..31203485-chr15:31204124..31206171,2	MCF-7	breast:
3	chr15:31194754..31196555-chr15:31204358..31205993,2	K562	blood:
4	chr15:31194754..31197268-chr15:31204493..31206566,3	K562	blood:

Variant related genes	Relation type
ENSG00000198690	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427955	chr15:30467980-31273174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv533434	chr15:30938215-31244225	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
7	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
10	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv1039037	chr15:31140415-31277268	Strong transcription ZNF genes & repeats Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv542309	chr15:31140415-31277268	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
14	nsv521842	chr15:31140700-31272670	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
17	nsv832952	chr15:31204426-31333998	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31196600-31210800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:31196800-31210400	Weak transcription	HSMMtube	muscle
3	chr15:31196800-31213000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:31196800-31215000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:31197000-31206200	Weak transcription	NH-A	brain
6	chr15:31197000-31210600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:31197000-31213400	Weak transcription	Stomach Mucosa	stomach
8	chr15:31197000-31216400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:31197200-31214000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:31197400-31207200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:31197400-31207400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:31197400-31208400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:31197400-31210600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:31197400-31211200	Strong transcription	A549	lung
15	chr15:31197400-31215000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr15:31198200-31210400	Weak transcription	K562	blood
17	chr15:31198200-31224000	Strong transcription	Dnd41	blood
18	chr15:31198400-31213000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:31198800-31205400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:31199200-31208600	Weak transcription	Fetal Heart	heart
21	chr15:31199800-31213400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:31200000-31211600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:31200000-31213200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:31200200-31211800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:31200200-31213400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:31200200-31214400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:31200200-31224000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:31200400-31213000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr15:31200400-31213400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:31200400-31213800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:31200400-31216200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:31200400-31221200	Strong transcription	Placenta	Placenta
33	chr15:31200400-31223200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:31200400-31242200	Strong transcription	Primary T cells from cord blood	blood
35	chr15:31200600-31211400	Strong transcription	Fetal Muscle Leg	muscle
36	chr15:31200600-31254800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:31200800-31213400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:31200800-31213600	Strong transcription	Liver	Liver
39	chr15:31201000-31207600	Strong transcription	NHEK	skin
40	chr15:31201000-31211200	Strong transcription	Brain Hippocampus Middle	brain
41	chr15:31201200-31207600	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:31201200-31211200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:31201200-31211200	Strong transcription	Fetal Brain Female	brain
44	chr15:31201200-31211400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr15:31201200-31224000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr15:31201200-31241400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:31201400-31206200	Strong transcription	Colonic Mucosa	Colon
48	chr15:31201600-31207600	Strong transcription	Brain Cingulate Gyrus	brain
49	chr15:31201800-31206800	Weak transcription	HMEC	breast
50	chr15:31201800-31208400	Weak transcription	Hela-S3	cervix

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