Variant report

Variant	rs142557508
Chromosome Location	chr12:8966061-8966062
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3330446	chr12:8964460-8966708	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8960000-8972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:8961400-8966600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr12:8961400-8969200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr12:8963000-8966400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:8963000-8970200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:8963200-8966600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:8963400-8966400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr12:8963400-8966400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:8963400-8966400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:8963800-8966600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:8964800-8966600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:8965000-8966600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:8965600-8967200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr12:8965800-8966400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr12:8965800-8967200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr12:8965800-8967200	Enhancers	Brain Germinal Matrix	brain
17	chr12:8965800-8968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr12:8966000-8966600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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