Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10011984	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10030288	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10030381	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10033457	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11133307	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11737133	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504400	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12649397	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1834432	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2033054	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2162137	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35539097	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4099487	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4864499	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6554152	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6554154	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6554155	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7654284	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7660472	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9990683	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv879020	chr4:54986912-55064573	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv523058	chr4:55018617-55045716	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55032400-55039600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:55033000-55037800	Weak transcription	HSMM	muscle
3	chr4:55036800-55037800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:55037000-55038800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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