Variant report

Variant	rs142593346
Chromosome Location	chr13:62302953-62302954
allele	-/CTC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1041037	chr13:62290172-62337672	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1038867	chr13:62302878-62594554	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62301600-62303400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:62301800-62303000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:62301800-62303400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:62302000-62303000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:62302000-62303000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:62302000-62303000	Enhancers	Stomach Smooth Muscle	stomach
7	chr13:62302000-62303000	Enhancers	NH-A	brain
8	chr13:62302000-62303200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr13:62302000-62303200	Enhancers	Colon Smooth Muscle	Colon
10	chr13:62302000-62303200	Enhancers	Fetal Kidney	kidney
11	chr13:62302000-62303200	Enhancers	Fetal Lung	lung
12	chr13:62302200-62303000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr13:62302400-62303200	Enhancers	Adipose Nuclei	Adipose
14	chr13:62302600-62303000	Enhancers	Brain Angular Gyrus	brain
15	chr13:62302600-62303000	Enhancers	Fetal Stomach	stomach
16	chr13:62302600-62303200	Enhancers	Rectal Smooth Muscle	rectum
17	chr13:62302800-62303200	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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