Variant report

Variant	rs142689039
Chromosome Location	chr8:52873846-52873847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1031672	chr8:52872448-52917469	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52870200-52874200	Weak transcription	Fetal Brain Male	brain
2	chr8:52871000-52874400	Weak transcription	HMEC	breast
3	chr8:52871200-52875000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:52871400-52874200	Weak transcription	Placenta	Placenta
5	chr8:52871400-52874400	Weak transcription	Fetal Intestine Small	intestine
6	chr8:52872600-52874200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:52872600-52874200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:52872800-52874200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:52873000-52874600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:52873200-52875600	Flanking Active TSS	Dnd41	blood
11	chr8:52873400-52874400	Enhancers	Primary B cells from peripheral blood	blood
12	chr8:52873600-52874200	Enhancers	Primary T cells from cord blood	blood
13	chr8:52873600-52874200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:52873600-52874200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr8:52873600-52874400	Enhancers	Primary B cells from cord blood	blood
16	chr8:52873600-52874400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr8:52873600-52874400	Enhancers	Primary hematopoietic stem cells	blood
18	chr8:52873600-52874400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:52873600-52874400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr8:52873600-52874400	Enhancers	Fetal Thymus	thymus
21	chr8:52873600-52874400	Enhancers	Spleen	Spleen
22	chr8:52873600-52874600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr8:52873600-52874800	Flanking Active TSS	GM12878-XiMat	blood
24	chr8:52873800-52874000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:52873800-52874000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr8:52873800-52874000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr8:52873800-52874000	Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr8:52873800-52874400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr8:52873800-52874400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:52873800-52874400	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr8:52873800-52874400	Enhancers	Right Atrium	heart
32	chr8:52873800-52874400	Enhancers	Thymus	Thymus
33	chr8:52873800-52874600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:52873800-52874600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr8:52873800-52874600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr8:52873800-52874600	Enhancers	Fetal Muscle Leg	muscle
37	chr8:52873800-52874600	Enhancers	Left Ventricle	heart
38	chr8:52873800-52874600	Enhancers	Psoas Muscle	Psoas
39	chr8:52873800-52874600	Enhancers	Right Ventricle	heart
40	chr8:52873800-52875000	Enhancers	Pancreas	Pancrea
41	chr8:52873800-52875400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr8:52873800-52875800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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