Variant report

Variant	rs1426911
Chromosome Location	chr8:67261453-67261454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7834904	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67252600-67266800	Weak transcription	Psoas Muscle	Psoas
2	chr8:67257200-67264600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:67257400-67264600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:67258600-67261800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:67259600-67261800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:67259600-67262200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:67259800-67261800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:67260200-67262000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:67260600-67263800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:67260800-67261800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:67260800-67261800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:67260800-67262000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:67260800-67262000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:67260800-67262400	Enhancers	Placenta	Placenta
15	chr8:67261000-67261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:67261400-67261800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:67261400-67262000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr8:67261400-67264600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links