Variant report

Variant rs142694020
Chromosome Location chr17:19655887-19655888
allele -/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:19648800-19656200 Weak transcription Aorta Aorta
2 chr17:19648800-19657000 Weak transcription Spleen Spleen
3 chr17:19649000-19656400 Weak transcription Right Atrium heart
4 chr17:19649200-19656200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr17:19650200-19656800 Enhancers Breast Myoepithelial Primary Cells Breast
6 chr17:19650600-19657000 Enhancers HMEC breast
7 chr17:19650600-19657600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr17:19651000-19656200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr17:19652200-19656000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr17:19652200-19656000 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr17:19652200-19656000 Weak transcription Osteobl bone
12 chr17:19652400-19656200 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr17:19652400-19656400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr17:19652400-19656600 Weak transcription Pancreas Pancrea
15 chr17:19652600-19656000 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr17:19652600-19656200 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr17:19652600-19656600 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr17:19653400-19657400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr17:19654400-19658600 Enhancers Stomach Mucosa stomach
20 chr17:19654600-19656000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr17:19654600-19656400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr17:19654600-19656400 Weak transcription Lung lung
23 chr17:19654800-19656000 Weak transcription Gastric stomach
24 chr17:19654800-19656200 Weak transcription GM12878-XiMat blood
25 chr17:19655000-19656000 Enhancers NHEK skin
26 chr17:19655200-19657200 Enhancers Fetal Muscle Trunk muscle
27 chr17:19655200-19657400 Enhancers Esophagus oesophagus
28 chr17:19655200-19657400 Enhancers HSMM muscle
29 chr17:19655400-19656200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr17:19655400-19656200 Enhancers Muscle Satellite Cultured Cells --
31 chr17:19655400-19656200 Enhancers Stomach Smooth Muscle stomach
32 chr17:19655400-19656400 Flanking Active TSS A549 lung
33 chr17:19655400-19656800 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
34 chr17:19655400-19657400 Enhancers Brain Substantia Nigra brain
35 chr17:19655400-19657400 Enhancers Duodenum Mucosa Duodenum
36 chr17:19655400-19657400 Enhancers Fetal Muscle Leg muscle
37 chr17:19655400-19657400 Flanking Active TSS Hela-S3 cervix
38 chr17:19655400-19657400 Enhancers HUVEC blood vessel
39 chr17:19655400-19657400 Enhancers NHDF-Ad bronchial
40 chr17:19655400-19657600 Enhancers HSMMtube muscle
41 chr17:19655600-19656200 Enhancers Brain Hippocampus Middle brain
42 chr17:19655600-19657400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr17:19655600-19657400 Enhancers Adipose Nuclei Adipose
44 chr17:19655600-19657400 Enhancers Brain Inferior Temporal Lobe brain
45 chr17:19655600-19657400 Enhancers NH-A brain
46 chr17:19655800-19656200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
47 chr17:19655800-19656200 Enhancers Brain Cingulate Gyrus brain
48 chr17:19655800-19656200 Bivalent Enhancer Skeletal Muscle Male skeletal muscle
49 chr17:19655800-19656600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
50 chr17:19655800-19656600 Enhancers Colonic Mucosa Colon

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