Variant report

Variant	rs142711496
Chromosome Location	chr13:95358572-95358573
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr13:95356949-95358691	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:95358540-95358590	HAEpiC	amniotic membrane:	n/a
2	chr13:95358540-95358590	NT2-D1	testis:	n/a
3	chr13:95358540-95358590	BE2_C	brain:	n/a
4	chr13:95358540-95358590	IMR90	lung:	fetal
5	chr13:95358540-95358590	PANC-1	pancreas:	n/a
6	chr13:95358540-95358590	HepG2	liver:	n/a
7	chr13:95358540-95358590	HMEC	breast:	n/a
8	chr13:95358540-95358590	LNCaP	prostate:	n/a
9	chr13:95358540-95358590	A549	lung:	n/a
10	chr13:95358540-95358590	HIPEpiC	eye:	n/a
11	chr13:95358540-95358590	HCT-116	colon:	n/a
12	chr13:95358540-95358590	NB4	blood:	n/a
13	chr13:95358540-95358590	HEEpiC	esophagus:	n/a
14	chr13:95358540-95358590	SKMC	muscle:	n/a
15	chr13:95358540-95358590	HRPEpiC	eye:	n/a
16	chr13:95358540-95358590	MCF10A-Er-Src	breast:	n/a
17	chr13:95358540-95358590	SAEC	small airway:	n/a
18	chr13:95358540-95358590	T-47D	breast:	n/a
19	chr13:95358540-95358590	HPAEpiC	pulmonary alveolar:	n/a
20	chr13:95358540-95358590	Jurkat	blood:	n/a
21	chr13:95358540-95358590	BJ	skin:	n/a
22	chr13:95358540-95358590	U87	brain:	n/a
23	chr13:95358540-95358590	GM12891	blood:	n/a
24	chr13:95358540-95358590	NHBE	bronchial:	n/a
25	chr13:95358540-95358590	PFSK-1	brain:	n/a
26	chr13:95358540-95358590	AG09309	skin:	n/a
27	chr13:95358540-95358590	NH-A	brain:	n/a
28	chr13:95358540-95358590	SK-N-SH_RA	brain:	n/a
29	chr13:95358540-95358590	RPTEC	kidney:	n/a
30	chr13:95358540-95358590	PrEC	prostate:	n/a
31	chr13:95358540-95358590	Hepatocyte	liver:	n/a
32	chr13:95358540-95358590	HCF	heart:	n/a
33	chr13:95358540-95358590	SK-N-MC	brain:	n/a
34	chr13:95358540-95358590	HNPCEpiC	eye:	n/a
35	chr13:95358540-95358590	HL-60	blood:	n/a
36	chr13:95358540-95358590	MCF-7	breast:	n/a
37	chr13:95358540-95358590	ECC-1	luminal epithelium:	n/a
38	chr13:95358540-95358590	Caco-2	colon:	n/a
39	chr13:95358540-95358590	Hela-S3	cervix:	n/a
40	chr13:95358540-95358590	HCM	heart:	n/a
41	chr13:95358540-95358590	K562	blood:	n/a
42	chr13:95358540-95358590	HEK293	kidney:	embryo
43	chr13:95358540-95358590	AG10803	skin:	n/a
44	chr13:95358540-95358590	AG04450	lung:	fetal
45	chr13:95358540-95358590	H1-hESC	embryonic stem cell:	embryo
46	chr13:95358540-95358590	AG04449	skin:	fetal
47	chr13:95358540-95358590	AG09319	gingival:	n/a
48	chr13:95358540-95358590	GM12892	blood:	n/a
49	chr13:95358540-95358590	ovcar-3	ovarian:	n/a
50	chr13:95358540-95358590	HRE	kidney:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95357906..95359959-chr13:95361552..95364059,2	MCF-7	breast:
2	chr13:95325863..95327596-chr13:95357586..95359779,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SOX21-1	chr13:95358391-95359564	XLOC_010695
2	lnc-SOX21-1	chr13:95358391-95358684	NONHSAT034737

No data

Variant related genes	Relation type
LINC00391	TF binding region
LINC00391	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1824604	chr13:95357807-95365771	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv826750	chr13:95358502-95368070	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95354600-95358600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr13:95355800-95359600	Weak transcription	Pancreas	Pancrea
3	chr13:95356400-95358600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:95357200-95359600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
5	chr13:95357600-95360800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:95357800-95359600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
7	chr13:95358000-95358600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:95358000-95358600	Bivalent Enhancer	Brain Anterior Caudate	brain
9	chr13:95358200-95358600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:95358200-95358600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr13:95358400-95358600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr13:95358400-95358600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr13:95358400-95358600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
14	chr13:95358400-95358600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
15	chr13:95358400-95358600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:95358400-95358800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:95358400-95358800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:95358400-95358800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
19	chr13:95358400-95358800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
20	chr13:95358400-95358800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:95358400-95361600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
22	chr13:95358400-95361600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain

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