Variant report

Variant	rs142721841
Chromosome Location	chr7:55862317-55862318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:55862234-55862519	K562	blood:	n/a	chr7:55862399-55862410
2	JUND	chr7:55862315-55862516	HepG2	liver:	n/a	chr7:55862363-55862374
3	MYC	chr7:55862243-55862553	MCF10A-Er-Src	breast:	n/a	n/a
4	CEBPB	chr7:55862286-55862561	HepG2	liver:	n/a	chr7:55862399-55862410
5	FOSL2	chr7:55862261-55862503	MCF-7	breast:	n/a	chr7:55862362-55862373
6	JUN	chr7:55862191-55862538	Hela-S3	cervix:	n/a	n/a
7	MYC	chr7:55862312-55862554	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr7:55862154-55862607	MCF10A-Er-Src	breast:	n/a	n/a
9	JUND	chr7:55862255-55862574	HCT-116	colon:	n/a	chr7:55862363-55862374
10	RCOR1	chr7:55862303-55862513	Hela-S3	cervix:	n/a	n/a
11	FOSL1	chr7:55862268-55862665	HCT-116	colon:	n/a	n/a
12	MAFK	chr7:55862297-55862546	Hela-S3	cervix:	n/a	n/a
13	STAT3	chr7:55862297-55862620	MCF10A-Er-Src	breast:	n/a	n/a
14	EP300	chr7:55862298-55862507	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr7:55862241-55862430	HCT-116	colon:	n/a	n/a
16	FOSL1	chr7:55862233-55862566	HCT-116	colon:	n/a	n/a
17	FOSL2	chr7:55862262-55862557	HepG2	liver:	n/a	chr7:55862362-55862373
18	CEBPB	chr7:55862243-55862570	Hela-S3	cervix:	n/a	chr7:55862399-55862410
19	STAT3	chr7:55862288-55862568	MCF10A-Er-Src	breast:	n/a	n/a
20	FOS	chr7:55862187-55862560	MCF10A-Er-Src	breast:	n/a	n/a
21	CEBPB	chr7:55862268-55862679	HCT-116	colon:	n/a	chr7:55862399-55862410
22	CTCF	chr7:55862260-55862410	HMEC	breast:	n/a	n/a
23	JUND	chr7:55862292-55862508	HepG2	liver:	n/a	chr7:55862363-55862374
24	MAFK	chr7:55862299-55862520	HepG2	liver:	n/a	n/a
25	CEBPB	chr7:55862294-55862497	HepG2	liver:	n/a	chr7:55862399-55862410
26	CHD2	chr7:55862308-55862515	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr7:55862315-55862530	ECC-1	luminal epithelium:	n/a	chr7:55862399-55862410
28	RFX5	chr7:55862291-55862533	Hela-S3	cervix:	n/a	n/a
29	FOS	chr7:55862282-55862554	Hela-S3	cervix:	n/a	n/a
30	CEBPB	chr7:55862241-55862744	HCT-116	colon:	n/a	chr7:55862399-55862410
31	JUND	chr7:55862184-55862546	Hela-S3	cervix:	n/a	chr7:55862363-55862374
32	FOS	chr7:55862194-55862557	MCF10A-Er-Src	breast:	n/a	n/a
33	CEBPB	chr7:55862291-55862665	MCF-7	breast:	n/a	chr7:55862399-55862410
34	CEBPB	chr7:55862272-55862668	MCF-7	breast:	n/a	chr7:55862399-55862410
35	FOSL2	chr7:55862155-55862523	HepG2	liver:	n/a	chr7:55862362-55862373
36	TCF7L2	chr7:55862317-55862517	Hela-S3	cervix:	n/a	n/a
37	JUND	chr7:55862304-55862426	HepG2	liver:	n/a	chr7:55862363-55862374
38	STAT3	chr7:55862270-55862554	MCF10A-Er-Src	breast:	n/a	n/a
39	CEBPB	chr7:55862253-55862555	K562	blood:	n/a	chr7:55862399-55862410
40	STAT3	chr7:55862281-55862530	MCF10A-Er-Src	breast:	n/a	n/a
41	CEBPB	chr7:55862300-55862535	A549	lung:	n/a	chr7:55862399-55862410
42	FOS	chr7:55862134-55862649	MCF10A-Er-Src	breast:	n/a	n/a
43	CEBPB	chr7:55862292-55862537	A549	lung:	n/a	chr7:55862399-55862410

Variant related genes	Relation type
CICP12	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv427782	chr7:55703073-56010314	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv888063	chr7:55728476-55899496	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv469612	chr7:55752394-55876163	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv482609	chr7:55752394-55876163	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
12	nsv970835	chr7:55816398-55872502	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
14	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
15	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
16	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
17	nsv966928	chr7:55855289-55872502	Weak transcription ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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