Variant report

Variant	rs142781908
Chromosome Location	chr3:42856076-42856077
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:42842006..42848504-chr3:42854036..42858354,7	K562	blood:
2	chr3:42846757..42848695-chr3:42854131..42856830,2	K562	blood:
3	chr3:42841845..42845236-chr3:42855285..42858253,3	K562	blood:
4	chr3:42853502..42856729-chr3:42859080..42861862,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144648	Chromatin interaction
ENSG00000181061	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847016	chr3:42855765-42880490	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42846800-42856400	Weak transcription	Right Atrium	heart
2	chr3:42847200-42856400	Weak transcription	NHEK	skin
3	chr3:42847400-42856200	Weak transcription	Colonic Mucosa	Colon
4	chr3:42849800-42856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:42853200-42856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:42853200-42856600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:42853200-42858600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr3:42853600-42856400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:42853800-42856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:42853800-42861000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:42853800-42861200	Weak transcription	Fetal Intestine Large	intestine
12	chr3:42853800-42862200	Weak transcription	Fetal Intestine Small	intestine
13	chr3:42854000-42856600	Weak transcription	Fetal Kidney	kidney
14	chr3:42854200-42856200	Weak transcription	Placenta	Placenta
15	chr3:42854200-42861200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:42854800-42858000	Enhancers	Fetal Heart	heart
17	chr3:42855000-42857600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:42855600-42856400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr3:42855600-42857400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr3:42855800-42857400	Enhancers	K562	blood
21	chr3:42855800-42857800	Enhancers	HepG2	liver
22	chr3:42856000-42856800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:42856000-42857200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:42856000-42857600	Enhancers	Stomach Mucosa	stomach
25	chr3:42856000-42857800	Enhancers	Hela-S3	cervix

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