The 2.0 version of rSNPBase

Variant report

Variant rs142826946
Chromosome Location chr13:30123306-30123307
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:30071000-30128800 Strong transcription Dnd41 blood
2 chr13:30092200-30133000 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr13:30097200-30138400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr13:30098800-30129000 Weak transcription Primary neutrophils fromperipheralblood blood
5 chr13:30103800-30137200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr13:30104200-30135400 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr13:30104800-30124600 Weak transcription Right Ventricle heart
8 chr13:30105200-30136800 Weak transcription Brain Germinal Matrix brain
9 chr13:30106600-30125400 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr13:30107200-30124200 Weak transcription Placenta Placenta
11 chr13:30107400-30129200 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr13:30110400-30123400 Weak transcription Spleen Spleen
13 chr13:30110400-30123400 Weak transcription NHLF lung
14 chr13:30110400-30124200 Weak transcription HMEC breast
15 chr13:30110400-30127200 Weak transcription Brain Angular Gyrus brain
16 chr13:30112800-30127200 Weak transcription Brain Cingulate Gyrus brain
17 chr13:30112800-30129200 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr13:30113200-30124600 Weak transcription Brain Anterior Caudate brain
19 chr13:30113200-30141600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr13:30113600-30124200 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr13:30113600-30129200 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr13:30113800-30136200 Weak transcription Rectal Smooth Muscle rectum
23 chr13:30114400-30126000 Weak transcription Colon Smooth Muscle Colon
24 chr13:30115200-30123400 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr13:30115200-30125600 Weak transcription Left Ventricle heart
26 chr13:30115600-30124600 Weak transcription Aorta Aorta
27 chr13:30115600-30125800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr13:30115800-30124800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr13:30117800-30124600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr13:30117800-30129000 Strong transcription Primary hematopoietic stem cells short term culture blood
31 chr13:30118000-30124600 Weak transcription Placenta Amnion Placenta Amnion
32 chr13:30118200-30124200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
33 chr13:30119200-30128000 Strong transcription HepG2 liver
34 chr13:30119400-30128600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr13:30119400-30128600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr13:30119400-30129200 Strong transcription NHEK skin
37 chr13:30119600-30128200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr13:30119600-30128600 Strong transcription GM12878-XiMat blood
39 chr13:30120000-30127000 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr13:30120000-30128400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
41 chr13:30120400-30123400 Weak transcription Primary B cells from peripheral blood blood
42 chr13:30120400-30123400 Weak transcription Brain Inferior Temporal Lobe brain
43 chr13:30120800-30123600 Enhancers Fetal Heart heart
44 chr13:30121000-30123600 Enhancers Pancreas Pancrea
45 chr13:30121000-30127200 Weak transcription Brain Substantia Nigra brain
46 chr13:30121000-30128600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr13:30121200-30123800 Enhancers HUVEC blood vessel
48 chr13:30121200-30128800 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr13:30121200-30128800 Strong transcription Primary T cells fromperipheralblood blood
50 chr13:30121400-30123400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015