Variant report

Variant	rs142830495
Chromosome Location	chr15:30021168-30021169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:30020490-30021721	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM189A1-3	chr15:30020390-30021735	ENSG00000259644.1

Variant related genes	Relation type
HMGN2P5	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	esv2422463	chr15:30003189-30215336	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv984039	chr15:30020901-30024443	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29989600-30021200	Strong transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:29989600-30027200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:29990200-30028400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:29990400-30026400	Strong transcription	Stomach Smooth Muscle	stomach
5	chr15:29991200-30022400	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:29992000-30026600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:29996200-30021400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:30005000-30023000	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr15:30005400-30022800	Strong transcription	HSMMtube	muscle
10	chr15:30007200-30021400	Strong transcription	Fetal Kidney	kidney
11	chr15:30007200-30021400	Strong transcription	NHLF	lung
12	chr15:30014800-30021200	Strong transcription	HMEC	breast
13	chr15:30014800-30028400	Strong transcription	NHEK	skin
14	chr15:30015000-30021600	Strong transcription	Brain Angular Gyrus	brain
15	chr15:30015000-30022200	Strong transcription	Osteobl	bone
16	chr15:30015000-30024400	Weak transcription	Psoas Muscle	Psoas
17	chr15:30015000-30028400	Weak transcription	Stomach Mucosa	stomach
18	chr15:30015000-30035000	Strong transcription	Adipose Nuclei	Adipose
19	chr15:30015200-30021200	Strong transcription	Brain Hippocampus Middle	brain
20	chr15:30015200-30021400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:30015200-30021400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:30015200-30021600	Strong transcription	Ovary	ovary
23	chr15:30015200-30022800	Strong transcription	NH-A	brain
24	chr15:30015200-30023200	Strong transcription	Placenta	Placenta
25	chr15:30015200-30024200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:30015400-30026600	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr15:30015400-30028600	Strong transcription	HUVEC	blood vessel
28	chr15:30015600-30021400	Strong transcription	Fetal Lung	lung
29	chr15:30015600-30026600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:30015600-30034800	Strong transcription	Fetal Muscle Leg	muscle
31	chr15:30015600-30035200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:30015600-30037600	Weak transcription	Small Intestine	intestine
33	chr15:30015800-30023000	Strong transcription	Fetal Stomach	stomach
34	chr15:30015800-30023200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:30015800-30026400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:30015800-30026800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr15:30015800-30027200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:30015800-30027600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:30015800-30034400	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:30016600-30021400	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:30016600-30021400	Strong transcription	HSMM	muscle
42	chr15:30016600-30021800	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr15:30016600-30023000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:30016600-30025800	Strong transcription	Left Ventricle	heart
45	chr15:30016600-30029800	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr15:30016600-30035200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:30016600-30052000	Weak transcription	Spleen	Spleen
48	chr15:30016600-30068200	Weak transcription	Brain Germinal Matrix	brain
49	chr15:30016800-30023000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr15:30016800-30027200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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