The 2.0 version of rSNPBase

Variant report

Variant rs142844228
Chromosome Location chr5:146812744-146812745
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:146798200-146815600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr5:146799000-146818400 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr5:146804400-146815800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr5:146804800-146831600 Weak transcription Fetal Muscle Trunk muscle
5 chr5:146805800-146819200 Enhancers Colon Smooth Muscle Colon
6 chr5:146806000-146814800 Enhancers Fetal Brain Male brain
7 chr5:146807600-146812800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr5:146808000-146816200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr5:146808200-146816400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr5:146808200-146816600 Weak transcription Osteobl bone
11 chr5:146808200-146818800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr5:146809000-146816600 Weak transcription Esophagus oesophagus
13 chr5:146809400-146819200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr5:146809800-146814000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr5:146810000-146823400 Weak transcription Small Intestine intestine
16 chr5:146810200-146812800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr5:146810400-146813200 Enhancers Fetal Brain Female brain
18 chr5:146810400-146815600 Enhancers Duodenum Smooth Muscle Duodenum
19 chr5:146810800-146812800 Enhancers H9 Cell Line embryonic stem cell
20 chr5:146810800-146813400 Enhancers Ovary ovary
21 chr5:146810800-146814200 Enhancers Fetal Intestine Large intestine
22 chr5:146810800-146817600 Genic enhancers ES-UCSF4 Cell Line embryonic stem cell
23 chr5:146810800-146819400 Enhancers iPS-15b Cell Line embryonic stem cell
24 chr5:146810800-146822600 Genic enhancers HUES48 Cell Line embryonic stem cell
25 chr5:146811000-146813200 Genic enhancers Brain Germinal Matrix brain
26 chr5:146811200-146812800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
27 chr5:146811200-146813000 Enhancers Left Ventricle heart
28 chr5:146811400-146813000 Enhancers Fetal Intestine Small intestine
29 chr5:146811400-146818800 Weak transcription Placenta Amnion Placenta Amnion
30 chr5:146811600-146815400 Weak transcription Brain Anterior Caudate brain
31 chr5:146811600-146815400 Weak transcription Lung lung
32 chr5:146811600-146815600 Weak transcription NH-A brain
33 chr5:146811600-146818800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr5:146811800-146813000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr5:146811800-146813000 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr5:146811800-146813600 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr5:146811800-146813800 Enhancers iPS-18 Cell Line embryonic stem cell
38 chr5:146812000-146812800 Flanking Active TSS Stomach Smooth Muscle stomach
39 chr5:146812000-146815400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr5:146812000-146815400 Weak transcription Psoas Muscle Psoas
41 chr5:146812000-146816200 Weak transcription Brain Substantia Nigra brain
42 chr5:146812000-146816400 Weak transcription Brain Cingulate Gyrus brain
43 chr5:146812000-146816400 Weak transcription Brain Hippocampus Middle brain
44 chr5:146812000-146816800 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr5:146812200-146813600 Strong transcription HUES64 Cell Line embryonic stem cell
46 chr5:146812200-146814000 Enhancers Rectal Smooth Muscle rectum
47 chr5:146812200-146815000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr5:146812200-146815200 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr5:146812200-146815400 Weak transcription ES-I3 Cell Line embryonic stem cell
50 chr5:146812200-146815400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015