The 2.0 version of rSNPBase

Variant report

Variant rs142883473
Chromosome Location chr10:97308369-97308370
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:97289200-97309000 Enhancers Left Ventricle heart
2 chr10:97291800-97308600 Enhancers Colon Smooth Muscle Colon
3 chr10:97296400-97311400 Enhancers Skeletal Muscle Male skeletal muscle
4 chr10:97296800-97312600 Weak transcription Placenta Placenta
5 chr10:97300400-97308800 Enhancers Psoas Muscle Psoas
6 chr10:97301000-97315200 Enhancers HepG2 liver
7 chr10:97301800-97311000 Weak transcription Colonic Mucosa Colon
8 chr10:97303000-97309600 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr10:97304200-97309600 Weak transcription Fetal Lung lung
10 chr10:97304200-97310000 Weak transcription Ovary ovary
11 chr10:97304200-97310800 Enhancers Rectal Smooth Muscle rectum
12 chr10:97304600-97312400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr10:97304800-97310200 Weak transcription Fetal Brain Male brain
14 chr10:97305000-97311200 Enhancers Skeletal Muscle Female skeletal muscle
15 chr10:97305000-97311400 Enhancers Breast Myoepithelial Primary Cells Breast
16 chr10:97305200-97318600 Weak transcription Fetal Muscle Trunk muscle
17 chr10:97305200-97319000 Weak transcription HSMM muscle
18 chr10:97305600-97309800 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr10:97305800-97308600 Weak transcription Brain Hippocampus Middle brain
20 chr10:97305800-97309600 Weak transcription K562 blood
21 chr10:97306000-97309600 Weak transcription Fetal Brain Female brain
22 chr10:97306000-97310000 Weak transcription Brain Inferior Temporal Lobe brain
23 chr10:97306200-97309000 Enhancers Right Atrium heart
24 chr10:97306200-97309200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
25 chr10:97306400-97308600 Weak transcription Liver Liver
26 chr10:97306600-97311600 Enhancers Fetal Heart heart
27 chr10:97306600-97312200 Weak transcription Fetal Intestine Small intestine
28 chr10:97306800-97311400 Enhancers Right Ventricle heart
29 chr10:97306800-97313000 Enhancers HUES6 Cell Line embryonic stem cell
30 chr10:97307000-97309000 Enhancers Brain Substantia Nigra brain
31 chr10:97307000-97309600 Enhancers Aorta Aorta
32 chr10:97307000-97309600 Weak transcription Brain Anterior Caudate brain
33 chr10:97307000-97310400 Enhancers iPS-15b Cell Line embryonic stem cell
34 chr10:97307200-97308400 Enhancers ES-WA7 Cell Line embryonic stem cell
35 chr10:97307200-97309400 Weak transcription Brain Angular Gyrus brain
36 chr10:97307200-97309600 Weak transcription Pancreas Pancrea
37 chr10:97307200-97309800 Weak transcription Brain Cingulate Gyrus brain
38 chr10:97307200-97310000 Weak transcription Lung lung
39 chr10:97307200-97310600 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr10:97307400-97308600 Enhancers Duodenum Smooth Muscle Duodenum
41 chr10:97307400-97309400 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr10:97307400-97310800 Weak transcription Esophagus oesophagus
43 chr10:97307600-97308400 Enhancers HUES48 Cell Line embryonic stem cell
44 chr10:97307800-97309800 Weak transcription Gastric stomach
45 chr10:97307800-97310000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr10:97307800-97310800 Weak transcription Fetal Intestine Large intestine
47 chr10:97308000-97308600 Enhancers Stomach Smooth Muscle stomach
48 chr10:97308000-97309200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
49 chr10:97308000-97309600 Weak transcription iPS-18 Cell Line embryonic stem cell
50 chr10:97308000-97309600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015