Variant report

Variant	rs1429032
Chromosome Location	chr5:15625672-15625673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10053108	0.84[CEU][hapmap]
rs1025328	0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs1025329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10454921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11953541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12187510	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs12187518	0.95[CEU][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs12189306	0.94[ASN][1000 genomes]
rs12189348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12652710	0.91[ASN][1000 genomes]
rs12652729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12656824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12656926	0.91[ASN][1000 genomes]
rs12658046	0.81[CEU][hapmap]
rs12659622	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12757	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159972	0.84[CEU][hapmap]
rs13165880	0.85[CEU][hapmap]
rs13170478	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs13185548	0.81[CEU][hapmap]
rs17523312	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17601883	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs17647599	0.81[CEU][hapmap]
rs1835128	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1835129	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1991529	0.83[CEU][hapmap]
rs2914763	0.85[EUR][1000 genomes]
rs4295390	0.88[CEU][hapmap]
rs4509017	0.86[YRI][hapmap]
rs4702090	0.82[CEU][hapmap]
rs4702098	0.82[CEU][hapmap]
rs60120968	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872217	0.85[YRI][hapmap]
rs6878131	0.88[CEU][hapmap]
rs6879143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6891138	0.84[CEU][hapmap]
rs6898779	0.88[CEU][hapmap]
rs7720476	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv4732	chr5:15598325-15636520	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15585000-15630200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:15593400-15633400	Weak transcription	Fetal Lung	lung
3	chr5:15600600-15645400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:15610000-15627400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:15610400-15635200	Weak transcription	Fetal Stomach	stomach
6	chr5:15613600-15635200	Weak transcription	Right Ventricle	heart
7	chr5:15620800-15635000	Weak transcription	Lung	lung
8	chr5:15620800-15635400	Weak transcription	Psoas Muscle	Psoas
9	chr5:15621400-15630000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:15621400-15635400	Weak transcription	Aorta	Aorta
11	chr5:15621600-15627000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:15621800-15627200	Weak transcription	HSMMtube	muscle
13	chr5:15621800-15627400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:15621800-15629200	Weak transcription	Left Ventricle	heart
15	chr5:15621800-15629600	Weak transcription	HSMM	muscle
16	chr5:15622000-15626600	Weak transcription	Colon Smooth Muscle	Colon
17	chr5:15622000-15627200	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:15622200-15625800	Weak transcription	Fetal Heart	heart
19	chr5:15622200-15627200	Weak transcription	HUVEC	blood vessel
20	chr5:15624200-15625800	Enhancers	Ovary	ovary
21	chr5:15625200-15629600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:15625400-15629600	Weak transcription	NHDF-Ad	bronchial
23	chr5:15625600-15625800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:15625600-15625800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:15625600-15627000	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:15625600-15627200	Weak transcription	Right Atrium	heart
27	chr5:15625600-15627400	Weak transcription	Brain Inferior Temporal Lobe	brain

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