Variant report

Variant	rs142907947
Chromosome Location	chr9:19056365-19056366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:19049339..19052176-chr9:19056143..19057826,3	MCF-7	breast:
2	chr9:19054696..19057530-chr9:19066725..19069005,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155876	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
2	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1028623	chr9:19034742-19394712	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv540079	chr9:19034742-19394712	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	esv3408862	chr9:19056310-19058050	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19050600-19056600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:19050600-19060800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:19050600-19062600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:19050600-19063600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:19050600-19069000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:19050800-19074200	Weak transcription	Lung	lung
7	chr9:19051000-19056600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:19051000-19059000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:19051200-19057000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:19051400-19056600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:19051400-19056600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:19051400-19056600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:19051400-19056600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:19051400-19056600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:19051400-19066400	Weak transcription	Colonic Mucosa	Colon
16	chr9:19051600-19056400	Weak transcription	Fetal Intestine Small	intestine
17	chr9:19051600-19056400	Weak transcription	Hela-S3	cervix
18	chr9:19051600-19056600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:19051600-19056600	Weak transcription	Esophagus	oesophagus
20	chr9:19051600-19056600	Weak transcription	Fetal Intestine Large	intestine
21	chr9:19051600-19056600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:19051600-19056600	Weak transcription	Fetal Muscle Leg	muscle
23	chr9:19051600-19056600	Weak transcription	Fetal Thymus	thymus
24	chr9:19051600-19074400	Weak transcription	Spleen	Spleen
25	chr9:19051600-19101400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:19051800-19056600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:19051800-19056600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:19051800-19056600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr9:19051800-19056800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:19051800-19057000	Weak transcription	A549	lung
31	chr9:19051800-19057200	Weak transcription	Brain Substantia Nigra	brain
32	chr9:19051800-19057400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:19051800-19059000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr9:19051800-19059400	Weak transcription	HSMMtube	muscle
35	chr9:19051800-19070200	Weak transcription	Fetal Kidney	kidney
36	chr9:19051800-19089000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:19052000-19056600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:19052000-19056600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:19052000-19056600	Weak transcription	Fetal Lung	lung
40	chr9:19052000-19056600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:19052000-19056600	Weak transcription	NHDF-Ad	bronchial
42	chr9:19052000-19056600	Weak transcription	NHEK	skin
43	chr9:19052000-19056800	Weak transcription	Primary T cells from cord blood	blood
44	chr9:19052000-19056800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:19052000-19056800	Weak transcription	Colon Smooth Muscle	Colon
46	chr9:19052000-19056800	Weak transcription	NH-A	brain
47	chr9:19052000-19057000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:19052000-19057000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr9:19052000-19057200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr9:19052000-19057200	Weak transcription	HMEC	breast

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